Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00787 ATGATGTCCAAAGACTATGCTGTGCAGAGTTTTTTGAAGTGGTGGAGGGCTGTTGTTGTTGTCTCAGCTGTTCAGAGAATCAAAGCTTATTTAGTGCACATCATATGCGAGTCCTCAGACTCTGAACTACATGCTTTTGTTCATCATAGTAGTAGTGGAGAGGTCTTTCATTATTCAGTTGGATTTAGCACCACCAAGATGAAGGTTCAAGAAACGAGGTCGCATGTTCATGCACTTGGGGAAGAAGAGAAGGTGATGACAAGGAAGCAGAAGGCTGAGTCCAAGGCACATGAAGTGGAACATTCTCCAAAGAAGGCCAAGGTGGAAAAAGAAGATGGCCACATCAACGGGAAATCTGAAACTGGCGTTGCAGAAGAATATGATGAGTTCTGCAAAGCCACAACCGAGCACCTTCCTTTGGAACAAATGAGAGACATTCTGGAGGCCAATGGCCTTGATTCTTCTGGCTCTGATCTTGAAATTACAAGAAGATGCCAAGACTTGCTGTTTTATGGTGCATTGGACAAATGCTCGGTTTGCAATGGGAGTTTGGAGTTTGATGGCAGACGTTATGTTTGCAGAGGGTTCTACAGTGAGTGGGCTAGTTGCACTTTCAGCACCAGAAACCCTCCAAGGAAACAGGAACCCATTAAGTTACCTGATTCTGTTCAGAACTCTCTGGCTTCAGACTTGCTAAAGAAATATCAGGACCCGAGTCACAGGCCTCACAGGGATCTAGGCTTAGCAGAAAAACCCTTTACTGGAATGATGATCTCTCTGATGGGTCGTCTTACTCGGACACACGTATGCTGCTGCACTGTCACTCTTGTTTTTGTTGCATTAGTTACTGAATGGATTTTGTTTTTGGCTACTCAGCATTATTGGAAAACAACTATTGAAAAGCATGGAGGGAAGGTGGCAAACTCTATAATTGGGTCAACTTGTTTGGTAGCTTCACCTGCTGAGCGAGAACGTGGTGGCACATCCAAACTTGCAGAAGCCATGGAGAGGAGTATACCAGTGGTTAGGGAGGCTTGGTTGATTGACAGCATTGAAAAGCAAGAACCACAACCTTTGGAAGCTTATGATCTTGTCTCTGATCTTTCTGTGGATGGCAAGGGTATCCCCTGGGACAAACAAGATCCTGGGGAAGAGGCTATCGAATCACTCTCAGCAGAACTCAAGCTTTATGGGAAGAGAGGAGTCTATAAAGATACCAAGTTGCAGGAACAAGGTGGAAAGATATTTGAAAGAGATGGGATACTATACAACTGTGCCTTCTCTGTTTGTGACCAAGGGCGAGGACTGAATGACTACTGTGTCATGCAACTGATTGTTGTCCCAGAGAATCGTTTGCATCTGTACTTTAAGAAAGGGAGAGTTGGGGATGATCCAAATGCAGAGGAGCGATTAGAAGAGTGGGACAATGTAGATGGTGCTCTGAAAGAGTTTGTGAGGCTCTTTGAGGAAATAACAGGAAATGAGTTTGAACCTTGGGAAAGAGAGAAGAAGTTCCAAAAGAAACCTTTGAAGTTTTACCCCATTGACATGGATGATGGAATTGAAGTTAGACATGGGGCACTAGGTCTTCGGCAGCTGGGGATAGCAGCAACACACTGCAAACTTGAGCCTTTGGTTGCAAATTTTATGAAGGTCTTGTGCAGCCAGGAGATATATAAGTATGCATTGATGGAGATGGGTTACGACTGTCCGGACCTTCCAATAGGAATGGTTACAAATCTTCATCTGAAAAAATGTGAGGACGTTCTCTTAGAATTCATAGACAAGGTGAAATCATTGAAAGAGACTGGGCCCAAGGCTGAGGCTGTGTGGACTGATTTTAGCCAAAGATGGTTCACTCTGATGCACTCCACAAGGCCTTTCAATTTTAGAGATTACCAAGAGATTGCAGATCACGCTGCTGCTGCGTTAGAGGGGGTGAGAGACATAACCCAGGCTTCTCACCTCATAGGAGATATGACTGGCTCAACCATTGATGACCCGTTATCAGAGACATACAAGAAATTGGGTTGCTCAATTTCTGCCTTGGACAAAAGTTCAGATGATTACGAGATGATTGTGAAATACCTTGAAAAAACTTATGAGCCGGTCAAAGTTGGTGACATTGAATATGGGGTGTCAGTGGAAAACATTTTTGCGGTTCAAACAGGTGGTTGCCCTTCCTATGAAGACATTATAAAACTACCAAATAAGGTTCTTCTATGGTGTGGATCACGAAGCTCAAACCTCTTGAGGCACTTGCAAAAGGGATTCTTGCCAGCAATATGCTCATTACCTATTCCGGGTTATATGTTTGGCAAAGCTATTGTCTGTTCTGATGCTGCAGCAGAGGCTGCAAGATATGGTTTTACTGCTGTGGACAGGCCAGAAGGATTCTTGGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAACCCCACCTGAGGATGCATCATCTTTGGAGGAAAAGAAGGTTGGAGTGAAGGGACCGGGGAAGAAGAAAACAGATGAATCGGAGCATTTTGTTTGGAAAGATGATATAAAAGTTCCTTGCGGTAAACTAGTTGCCTCAGACCATCAAGATAGCCCCCTGGAATACAACGAGTATGCTGTCTACGATAAAAAGCGGGCACGCATAAGCTACTTGGTGGGAGTGAAGTATGAAGAGAAGGAAGAGAAGGGTGCGGTGATTGACACAGCTGAATGA 2718 0.4426 MMSKDYAVQSFLKWWRAVVVVSAVQRIKAYLVHIICESSDSELHAFVHHSSSGEVFHYSVGFSTTKMKVQETRSHVHALGEEEKVMTRKQKAESKAHEVEHSPKKAKVEKEDGHINGKSETGVAEEYDEFCKATTEHLPLEQMRDILEANGLDSSGSDLEITRRCQDLLFYGALDKCSVCNGSLEFDGRRYVCRGFYSEWASCTFSTRNPPRKQEPIKLPDSVQNSLASDLLKKYQDPSHRPHRDLGLAEKPFTGMMISLMGRLTRTHVCCCTVTLVFVALVTEWILFLATQHYWKTTIEKHGGKVANSIIGSTCLVASPAERERGGTSKLAEAMERSIPVVREAWLIDSIEKQEPQPLEAYDLVSDLSVDGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDTKLQEQGGKIFERDGILYNCAFSVCDQGRGLNDYCVMQLIVVPENRLHLYFKKGRVGDDPNAEERLEEWDNVDGALKEFVRLFEEITGNEFEPWEREKKFQKKPLKFYPIDMDDGIEVRHGALGLRQLGIAATHCKLEPLVANFMKVLCSQEIYKYALMEMGYDCPDLPIGMVTNLHLKKCEDVLLEFIDKVKSLKETGPKAEAVWTDFSQRWFTLMHSTRPFNFRDYQEIADHAAAALEGVRDITQASHLIGDMTGSTIDDPLSETYKKLGCSISALDKSSDDYEMIVKYLEKTYEPVKVGDIEYGVSVENIFAVQTGGCPSYEDIIKLPNKVLLWCGSRSSNLLRHLQKGFLPAICSLPIPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKTPPEDASSLEEKKVGVKGPGKKKTDESEHFVWKDDIKVPCGKLVASDHQDSPLEYNEYAVYDKKRARISYLVGVKYEEKEEKGAVIDTAE 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00787 905 MobiDBLite consensus disorder prediction 86 118 - -
Gma12g00787 905 Pfam PADR1 (NUC008) domain 163 213 IPR012982 -
Gma12g00787 905 CDD BRCT_PARP1 253 352 - -
Gma12g00787 905 Pfam Poly(ADP-ribose) polymerase, regulatory domain 540 673 IPR004102 GO:0003950
Gma12g00787 905 SUPERFAMILY ADP-ribosylation 676 894 - -
Gma12g00787 905 MobiDBLite consensus disorder prediction 819 839 - -
Gma12g00787 905 CDD parp_like 539 890 - -
Gma12g00787 905 PANTHER POLY [ADP-RIBOSE] POLYMERASE 291 894 - -
Gma12g00787 905 PANTHER POLY [ADP-RIBOSE] POLYMERASE 67 269 - -
Gma12g00787 905 SMART WGR_cls 423 506 IPR008893 -
Gma12g00787 905 Gene3D - 677 893 - -
Gma12g00787 905 ProSiteProfiles PARP alpha-helical domain profile. 539 658 IPR004102 GO:0003950
Gma12g00787 905 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 539 675 IPR036616 GO:0003950
Gma12g00787 905 Pfam BRCA1 C Terminus (BRCT) domain 291 351 IPR001357 -
Gma12g00787 905 Gene3D - 121 242 - -
Gma12g00787 905 PANTHER DNA LIGASE 291 894 - -
Gma12g00787 905 PANTHER DNA LIGASE 67 269 - -
Gma12g00787 905 SUPERFAMILY WGR domain-like 388 517 IPR036930 -
Gma12g00787 905 Pfam Poly(ADP-ribose) polymerase catalytic domain 687 890 IPR012317 GO:0003950
Gma12g00787 905 SMART PADR1_2 161 214 IPR012982 -
Gma12g00787 905 Pfam WGR domain 423 502 IPR008893 -
Gma12g00787 905 ProSiteProfiles PARP catalytic domain profile. 667 898 IPR012317 GO:0003950
Gma12g00787 905 ProSiteProfiles BRCT domain profile. 248 364 IPR001357 -
Gma12g00787 905 ProSiteProfiles WGR domain profile. 412 512 IPR008893 -
Gma12g00787 905 SUPERFAMILY BRCT domain 292 375 IPR036420 -
Gma12g00787 905 ProSiteProfiles SAP motif profile. 135 169 IPR003034 -
Gma12g00787 905 CDD WGR_PARP1_like 413 519 - -
Gma12g00787 905 Gene3D - 535 676 IPR036616 GO:0003950
Gma12g00787 905 MobiDBLite consensus disorder prediction 816 839 - -
Gma12g00787 905 Gene3D BRCT domain 286 370 IPR036420 -
Gma12g00787 905 SMART BRCT_7 272 354 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00787 Gma-Chr12 7298071 7305262 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00787 K10798 - gmx:548024 1633.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00787 12 7298071 7305262 Gma12g00787 12 7298071 7305262 ECH
Gma12g00787 12 7298071 7305262 Gma11g01515 11 16046617 16052454 GST