Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00776 ATGGCGATTGATAATATTTTTAAAAATGAAGCTAGTGAAGAAAAAGGAGAGCGTGCCAGAATGGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTAGTGAAGACAACCTTGGGGCCAAAGGGAATGGATAAAATTTTGCAGTCAACAGGTAGAGGACGTGAAGTTACTGTCACGAATGATGGCGCTACAATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTTTAGACATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCAGTTGTTGTGTTGGCTGGTGAACTTTTAAGGGAGGCAGAAAAGCTGGTTGCAACCAAGATTCATCCGATGACAATAATATCAGGTTTTCGAATGGCAGCAGAGTGTGCTCGTAATGCTTTGTTGGAGAAGGTTGTGGACAATAAAGCAGATTCTGAGAAATTCAGGTCAGACTTATTGAACATTGCAATGACTACTTTGAGCTCCAAGATTCTCTCACAGGACAAGGAGCATTTTGCAAAATTAGCTGTGGATGCTGTAATGAGACTAAAGGGAAGCACCAATTTAGAATCTATCCAGATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAATGCAAAGATACTGGTGGCAAACACTGCCATGGACACAGACAAAGTGAAGATATATGGTGCACGTGTTCGTGTTGATTCTATGGCTAGAGTTGCTCAGATTGAAACAGCTGAGAAAGAGAAAATGAGAGAAAAGGTGCAGAAGATAATAGGTCATGGTATCAACTGTTTTGTTAACAGACAGTTGATTTACAATTTTCCAGAGGAGCTCTTTGCTGATGCAGGAATATTGGCTATTGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCTTTGGTAACTGGTGGTGAAATTGCGTCAACCTTTGACAATCCTGAGTCTGTTAAGCTTGGGCATTGCGACCTTATTGAGGAGATTATGATTGGCGAGGATAAACTGATTCATTTTTCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTTTGAGAGGTGCTAGCCACCATGTTCTTGATGAGGCTGAGAGGTCATTGCATGATGCCTTGTGTGTGCTATCTCAGACTGTCAATGACAGCAGGGTGTTGCTTGGAGGTGGGTGGCCTGAGATGGTGATGGCAAAAGAAGTTGATGCATTGGCTAAGAAAACTCCTGGAAAGAAGTCTCTTGCTATTGAGGCATTCTCCCGTGCACTCTTGGCTATTCCAACAATCATTGCTGATAATGCTGGTTTGGACAGTGCTGAGTTGATTTCTCAGCTCCGTGCAGAGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAAGCTGTATTGCTATCTTCAACAGAGGCAGCTGAGATGATCCTTAGAGTTGATGAAATCATCACGTGTGCTCCGAGGAGGAGAGAAGACCGAATGTAA 1584 0.428 MAIDNIFKNEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLLDISKVQDDEVGDGTTSVVVLAGELLREAEKLVATKIHPMTIISGFRMAAECARNALLEKVVDNKADSEKFRSDLLNIAMTTLSSKILSQDKEHFAKLAVDAVMRLKGSTNLESIQIIKKPGGSLMDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMARVAQIETAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCDLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEVDALAKKTPGKKSLAIEAFSRALLAIPTIIADNAGLDSAELISQLRAEHQKEGCTAGIDVISGSVGDMAERGICEAFKVKQAVLLSSTEAAEMILRVDEIITCAPRRREDRM 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00776 527 CDD TCP1_beta 6 522 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Gma12g00776 527 Pfam TCP-1/cpn60 chaperonin family 30 517 IPR002423 GO:0005524
Gma12g00776 527 ProSitePatterns Chaperonins TCP-1 signature 2. 58 74 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Gma12g00776 527 Gene3D GroEL 211 363 IPR027409 -
Gma12g00776 527 SUPERFAMILY GroEL apical domain-like 206 372 IPR027409 -
Gma12g00776 527 PANTHER CHAPERONIN 5 525 IPR017998 GO:0140662
Gma12g00776 527 TIGRFAM chap_CCT_beta: T-complex protein 1, beta subunit 5 523 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Gma12g00776 527 ProSitePatterns Chaperonins TCP-1 signature 3. 86 94 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Gma12g00776 527 SUPERFAMILY GroEL-intermediate domain like 152 399 IPR027410 -
Gma12g00776 527 Gene3D - 142 399 IPR027410 -
Gma12g00776 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 56 74 IPR017998 GO:0140662
Gma12g00776 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 32 48 IPR017998 GO:0140662
Gma12g00776 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 86 105 IPR017998 GO:0140662
Gma12g00776 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 401 413 IPR017998 GO:0140662
Gma12g00776 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 367 389 IPR017998 GO:0140662
Gma12g00776 527 ProSitePatterns Chaperonins TCP-1 signature 1. 35 47 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Gma12g00776 527 SUPERFAMILY GroEL equatorial domain-like 13 519 IPR027413 -
Gma12g00776 527 Gene3D - 27 516 IPR027413 -
Gma12g00776 527 PANTHER BNAA02G05110D PROTEIN 5 525 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00776 Gma-Chr12 7212232 7218791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00776 200 386 Acyl Lipid Metabolism Gene Families AT4G33240 21.393 3.70e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00776 K09494 - gmx:100797805 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00776 12 7212232 7218791 Gma11g01526 11 16240167 16248026 GST