Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00741 ATGGTTCCGTTCCCGTCAGAGAACGGCGTTGAAGGAGACgacgagagagaagaggaagacgaagaggaagaagaagaagaggaagacgaagaagtggtggaagatgaagaagacgaagaggaaCCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATCCCTTCGCTGCTTGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGGTTAAGGAATTCTCTGCACATGCTTCTGTTGTCAATGACCTTAGCTTTGACACAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCAGTTGTGATAAACAGTCTTTTCACTGATGAGAAATTGAAGTTTGAGTACCATCGGCCGATGAAGGCAGTTGCGTTGGATCCAGATTATGCAAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTAGGATACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGTTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTATTACATTTATTGAAAAACCACGGGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGGATGACAGCCTCTTAGTTATTGGCTGGGGAAAATCTGTCAAAATTGCTTCAATTAGGACAAATCACCAAAAAGCAGCCAATGGGTCATTCAGGCAAGTTCCTTTGACTGGTATGACCCAGGTGGATATTGTGGCATCTTTCCAAACCAGCTATTTCATTTCAGGACTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTAGCATATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCACCGCTCCTTTACGGCAGGGCAATGCACAAAGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCTACAGATGCTCTTCCAGTACATGGGTTTGAGCATTACAGGGCGAAGGACTATTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGGGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAACCAAGGGATACTGAAGATCATATTGCATGGCTTCTTCAGCACGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGCCAGGGACGGAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTTGATCATTTGATTGTGGAAAGAAAATACAGGGAAGCAGCATCTTTGTGTCCCAAGTTGCTTCGAGGATCAGCTTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAGCTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGGTTGCTCTTGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCTTTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCATCCATGACTGATTCACTTAAGGAGGCATTAGCAGAGTTGTATGTAATCGATGGGCAATTTGAGAAAGCCTTCTTGTTGTATGCTGATCTTTTGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCTATTCGTGGAAAGGTTGTCCAACTAATGAGGCTAGATTGCAAGCGCGCTGTTCCTTTGTTAATCCAGAATAGGGACTTAATAAGTCCACCTGAAGTTGTGAATCAACTTCTAAATGCAGATGATAAGAGTGATTGTAGATATTTTTTACATTTATATCTCCACTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTACCTTTTCTCCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTACGAAATTTGCATTAAAAGAGACCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCGAAACAAGCCCTAGCTGTTATTATAAACAAATTGGGGGATATAGAGGAGGCCGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTACATTGTAAATAAGGTTCCTAATGGGTTGGAAATCCCTCGGCTCCGGGATCGGCTGGTTAAGATTATCACCGACTACAGGACTGAAACATCGCTCAGACATGGATGCAATGATATCATTAAGGCGGACTGTGTCAATCTTTTAATTAAGTATTACAAAGAGGCAAGGCATGGGATTTCTTTAGGTAATGAAGATGAGCCGCGGGTTAAAATGAGTGATACTCGTGCTTCTCAGAAAGAGGTCCAAGCCACGTCCCTAGAGGCGGAAACGTATGATGGTTACAATGGTTATGAGGAAGATGCTAGTGAGGATGATGAAGAAGCCAAGTCTGGTGGTCCTCGTATGCGTTGTATATTGTGTACTACTGCTGGCTAG 2691 0.4247 MVPFPSENGVEGDDEREEEDEEEEEEEEDEEVVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDTEGEYIGSCSDDGSVVINSLFTDEKLKFEYHRPMKAVALDPDYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWVNDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDDSLLVIGWGKSVKIASIRTNHQKAANGSFRQVPLTGMTQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDGDKDFSSTAPLRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYREAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGQFEKAFLLYADLLKPEVFDFIDKHNLHDAIRGKVVQLMRLDCKRAVPLLIQNRDLISPPEVVNQLLNADDKSDCRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDIIKADCVNLLIKYYKEARHGISLGNEDEPRVKMSDTRASQKEVQATSLEAETYDGYNGYEEDASEDDEEAKSGGPRMRCILCTTAG 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00741 896 Gene3D Tetratricopeptide repeat domain 606 832 IPR011990 GO:0005515
Gma12g00741 896 Gene3D - 7 283 IPR015943 GO:0005515
Gma12g00741 896 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 613 760 IPR000547 GO:0006886|GO:0016192
Gma12g00741 896 Pfam Region in Clathrin and VPS 613 756 IPR000547 GO:0006886|GO:0016192
Gma12g00741 896 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 836 - -
Gma12g00741 896 MobiDBLite consensus disorder prediction 11 40 - -
Gma12g00741 896 Coils Coil 16 39 - -
Gma12g00741 896 SMART WD40_4 87 126 IPR001680 GO:0005515
Gma12g00741 896 MobiDBLite consensus disorder prediction 841 884 - -
Gma12g00741 896 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 836 IPR045111 GO:0006623
Gma12g00741 896 SUPERFAMILY WD40 repeat-like 59 252 IPR036322 GO:0005515
Gma12g00741 896 MobiDBLite consensus disorder prediction 1 44 - -
Gma12g00741 896 PIRSF Vps41 1 893 IPR016902 GO:0034058|GO:0046907
Gma12g00741 896 SMART CLH_2 613 760 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00741 Gma-Chr12 6705871 6722451 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00741 K20184 - gmx:100804711 1654.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00741 12 6705871 6722451 Gma12g00741 12 6705871 6722451 ECH
Gma12g00741 12 6705871 6722451 Gma11g01566 11 16780681 16790972 GST