Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00683 ATGGCGGGCAAAGGTGGATCAACTCCGGCCACATATTCGCCGTCTCCGACGACCGATAAGAAGAAACCATCGCTTTTCAATGAGGATTTGGCTCGACCTGATGGCCGCAGTTTCCACCAGTGCAGACCCGCATTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTATGCTGAGGTTGGAAATACCAAGGTCATTGTATCAGTATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCGTTTGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCGATTCGTGGGCAGGGTTCAGACCACAAAGAGTACAGTTCAATGCTTCATAAAGCTTTGGAGGGAGCAATAATACTGGAAACATTCCCCAAGACAACTGTGGATGTCTTTGCATTGGTGCTGGAATCTAGTGGCAGTGATCTCCCAGTTGTCATATCATGTGCAAGCCTTGCCCTTGCAGATGCGGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTGTCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAATGGCCAAGATGGAAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAGGGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGGTCATGTTTAAAAGAAGCTGTTTCGGATTCCCAGGAATAG 765 0.4601 MAGKGGSTPATYSPSPTTDKKKPSLFNEDLARPDGRSFHQCRPAFFRTGAVNAASGSAYAEVGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPIRGQGSDHKEYSSMLHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVASVSVSCFNKNLVIDPVLEEENGQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKIMRSCLKEAVSDSQE 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00683 254 SUPERFAMILY Ribonuclease PH domain 2-like 166 251 IPR036345 -
Gma12g00683 254 Pfam 3' exoribonuclease family, domain 2 168 228 IPR015847 -
Gma12g00683 254 PANTHER EXOSOME COMPLEX COMPONENT MTR3 9 250 - -
Gma12g00683 254 Pfam 3' exoribonuclease family, domain 1 40 164 IPR001247 -
Gma12g00683 254 PANTHER EXOSOME COMPLEX COMPONENT 9 250 - -
Gma12g00683 254 CDD RNase_PH_MTR3 41 247 - -
Gma12g00683 254 MobiDBLite consensus disorder prediction 1 33 - -
Gma12g00683 254 SUPERFAMILY Ribosomal protein S5 domain 2-like 31 191 IPR020568 -
Gma12g00683 254 Gene3D - 18 253 IPR027408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00683 Gma-Chr12 6023031 6028132 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00683 K12587 - gmx:100816271 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00683 12 6023031 6028132 Gma12g00683 12 6023031 6028132 ECH
Gma12g00683 12 6023031 6028132 Gma11g01629 11 17604554 17609904 GST