Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00634 ATGATTGACATCCCTGCCCATGCCTATTTATCATCCACCCCTCCATCCTTCTCTTTCCCTTCACCTTCCTCGGACCTCCTATTCTTCTTCCCTCACGCAACTCACGTCATCCACACCAACACATCCCACCGGCGAGCTCCAAACAGAGTCACCTCCTCCAAGTTGCCCCCAAAGACAAAATCGCACTTGTGTCACACCCCATCGTTGAGTTCGAAGCAACCATTGAAACGTTCCCATCAAATCAACATCGCCCCACACCGACCATCACCCAACAAGATCGGTGTCACGCCGCATCGACCTCCTCGCCCCCACCATATCTATGTTGTGGTGCATCAAGATCTAGGTCAAGCCACCTACGCCATCAAGATCCGCTTAGCACCACACACCACTTGCCCTGTCGAGATTCAGCACCCGTGCTTCTCGTTTTGGGATTTTATTAAAGTCCCATGCAACTCAACTCGGCCCAGGTTTCATTCCTTCCCTTCTTTTCCCGTCCAAAGACCCTCCCAAGTGACGGTGACGGCGCTCGACGGCGACGGCACTCTGTTTCAGCGTTCTAACTTACTGCACACATCCCAATCCCCTCTGTTTTCGTTTGGATTGATTAAGAAATTGCTGCTTCAAATATCCTGTTACACTCAATTTCCCATCCCATTTGCACCCTTTAATTCTCACTATTCAACGAAGGCTCCTTCAAGATCTTACCAAAGACGAGCTCGAAAGAGGTTGTTAAAGTCCTCCAAGCCTACACTAGACCAAGCCCAATTTCAGCTGGCTCTGTCCCAACTTCCCCCGAGGTTCACTCCTGAAGAACTCTGCAATGTGATTGCTCGACAAAATGACCCTTTAGTTTGCTTAGAATTGTTTCACTGGGCGTCTCAGCAGCCCCGCTTTCGACACGATGTGTCCACGTTTCATATCACCATAAAGAAGCTTGGCGCTGCAAAGATGTACCAAGAAATGGATGATATTGTGAACCAACTGCTTGCAGTTCCTTTAATTGGTTCAGAGGCATTGTTCAACATGGTTATATATTATTTCACTCAGGCACGGAAATTGACTAGAGCTGTCAATGTGTTTAAGCACATGAAAAGTAGAAGAAATTTGAATTGCTTTTTTAGGCCTTCTATCAGGACATATAATATTCTTTTTGCCGCATTTTTGGGTAGAGGGAGCAACTCTTATATAAACCATGTGTATATGGAAACAATTAGGTGTTTGTTCAGGCAAATGGTCAAGGATGGCATTAAGCCTGATATTTTTTCATTGAATTCTATGATCAAAGGATATGTGCTATCTCTTCATGTTAATGATGCGTTGAGGATATTTCATCAGATGGGTGTGATCTATGATTGCCCGCCCAACGCACTAACATACGATTGCTTGATTCACGGTTTGTGTGCCCAAGGCAGAACAAATAATGCTAAAGAATTGTATTCTGAAATGAAGACGAAAGGTTTTGTTCCTAGTAGTAAATCTTATAATTCGCTTGTCAATTCTTTGGCACTTGGTGGAGAGATTGAGGAGGCAGTAAATTATCTGTGGGAGATGACTGATAAGCAAAGGTCAGCTGATTTTATTACATATAAGACTGTACTGGATGAGATATGTAGACGAGGAACAGTTCAGGAGGGCACGAGGTTTTTGCAGGAGTTGCAAGAAAAGGACCTTGTAGACGGGCATGCTTATAGGAAGCTTCTATATGTGCTTGAAGATGACTATGGGAATTCAGTGAGCAGAATTGATTCAGAGCAAATGCAGTTTTGA 1767 0.4454 MIDIPAHAYLSSTPPSFSFPSPSSDLLFFFPHATHVIHTNTSHRRAPNRVTSSKLPPKTKSHLCHTPSLSSKQPLKRSHQINIAPHRPSPNKIGVTPHRPPRPHHIYVVVHQDLGQATYAIKIRLAPHTTCPVEIQHPCFSFWDFIKVPCNSTRPRFHSFPSFPVQRPSQVTVTALDGDGTLFQRSNLLHTSQSPLFSFGLIKKLLLQISCYTQFPIPFAPFNSHYSTKAPSRSYQRRARKRLLKSSKPTLDQAQFQLALSQLPPRFTPEELCNVIARQNDPLVCLELFHWASQQPRFRHDVSTFHITIKKLGAAKMYQEMDDIVNQLLAVPLIGSEALFNMVIYYFTQARKLTRAVNVFKHMKSRRNLNCFFRPSIRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVKDGIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVIYDCPPNALTYDCLIHGLCAQGRTNNAKELYSEMKTKGFVPSSKSYNSLVNSLALGGEIEEAVNYLWEMTDKQRSADFITYKTVLDEICRRGTVQEGTRFLQELQEKDLVDGHAYRKLLYVLEDDYGNSVSRIDSEQMQF 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00634 588 Pfam PPR repeat family 454 502 IPR002885 -
Gma12g00634 588 PANTHER ATPASE EXPRESSION PROTEIN 3 213 584 - -
Gma12g00634 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Gma12g00634 588 Pfam PPR repeat 422 446 IPR002885 -
Gma12g00634 588 Pfam PPR repeat 340 366 IPR002885 -
Gma12g00634 588 TIGRFAM PPR: pentatricopeptide repeat domain 422 456 IPR002885 -
Gma12g00634 588 TIGRFAM PPR: pentatricopeptide repeat domain 458 490 IPR002885 -
Gma12g00634 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Gma12g00634 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Gma12g00634 588 MobiDBLite consensus disorder prediction 40 76 - -
Gma12g00634 588 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 213 584 - -
Gma12g00634 588 Gene3D Tetratricopeptide repeat domain 393 581 IPR011990 GO:0005515
Gma12g00634 588 Gene3D Tetratricopeptide repeat domain 236 392 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00634 Gma-Chr12 5310494 5315414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00634 320 557 Glycosyltransferase AT1G05670 29.832 5.89e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00634 - - gmx:102666460 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00634 12 5310494 5315414 Gma12g00634 12 5310494 5315414 ECH