Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00624 ATGTTGAAGAAGCAATCTGTCTTGTCCTTGTCACTAGTAATGCTAATTTCATTTATGTATTCGACAACCACCTTAGCCCAATTATCACCAGCTTCAGCCCCTCTCAAACCGCCCCAACCTGCTCCTACCATACCAGCTGCGGCTCCTCAACAACCATTGGTTCCCTCATTGCCACAGTCACCAAGTGATTCCACTCCTGAAAGTACTCCAGCACTTGACATTGTTGGAATCCTGAGGAAGGCAAAGTCATTCAACATCCTAATCCGTCTCATGAAAACCACCCAATTGATCAACCAACTCAATGCACAGCTCCTCACTACTAAATCAGGTGGCATTACCATTCTTGCACCTGATGACAGTGCCTTCTCAGAACTCAAAGCAGGGTTTCTCAACTCTCTTTCTGATGGACAGAAGCTCGAGCTCTTACAGTTCCATGTTCTTTCAGACTATGTCTCTAGCTCCAACTTTGATACACTGACGAACCCTGTTAGAACACTAGCAGGGGCTAAACCTGGAAAGGTGGAACTGAATGTGATAAGTTACGGAGGGAGTGTGAACATCTCAACGGGTGAGGTTAACACCACCATCACTGGCATTATATATACCGATAAGCATCTTGCTATTTATAAGGTGGGGAAAGTGCTTCTTCCTACGGACTTCTTTGCAGTTACCAAGGCACCTGCAAAATCACCCTCTTTGGCTCCAGAACCTTCAAGTGACACCGCAAAGGCACCTAAAGCTGATAAGGACGAGTCATCATCTTCAGATTCGTCACAGGTTAATCCCACTGAACAGAACTCTGGCACCGAGAAGATCGCTGTGTACGGAATGTGGATGTCACTTGGACTTGGAGCACTTCTCATGAAACCTTCAGCAAAGGCTCCTAAAGCGGATAAGGAAAATTCACTGTGCCCAGATTCCTCAGAATCATCTCAGATTAATTCTACAAATGAGAATTCTGGCACTGTGAAAATCTATGCGCATGGCAAGTTTGTTTCATTTGGTGATGTTGTGCCTCACAGACCAGTGGAAGATCTTGCATTTGCTGTGGCACGCTTTTACCAGCGAGGAAACGAGATGATGCCACAACTTTTTTGGTTGGTTGCTTGGAAACAGTACCATGGAGGGACTAATTTTGGCCGAACTACTGGTGGACCTTTCATTTCTACTAGTTATGATTTTGATACACCAATTGATGAGTATGGAATTATTAGACAGCCTAAGTGGGACCACCTTAAAAATGTGCATAAGGCAATAAAACTTTGTGAAAAAGCGCTGCTAGCTACTGGTCCAACAATTACATATCTTGGACCAAATATAGAGGCTGCAGTTTACAACATAGGAGCTGTAAGTGCTGCCTTCCTTGCCAACATTGCCAAAACTGATGCAAAAGTAAGCTTCAATGGAAATTCATATCACTTGCCCGCATGGTATGTGAGCACCTTACCAGACTGCAAGAGTGTAGTGCTTAATACCGCAAAGATTAACTCTGCATCTATGATTTCAAGCTTCACAACTGAATCTTTAAAAGAAGAGGTTGGCTCTTTGGATGATTCTGGCTCGGGATGGAGTTGGATTAGTGAACCTATCGGTATTTCAAAGGCTCATTCATTCTCAAAATTTTGGCTACTGGAGCAAATAAATACAACTGCAGATAGAAGTGATTACTTGTGGTATTCCTCAAGCATTGATCTTGATGCTGCTACTGAAACTGTCCTTCACATTGAATCCCTTGGTCATGCTCTTCATGCTTTCGTAAATGGGAAGCTTGCAGCATTTTAA 1782 0.4349 MLKKQSVLSLSLVMLISFMYSTTTLAQLSPASAPLKPPQPAPTIPAAAPQQPLVPSLPQSPSDSTPESTPALDIVGILRKAKSFNILIRLMKTTQLINQLNAQLLTTKSGGITILAPDDSAFSELKAGFLNSLSDGQKLELLQFHVLSDYVSSSNFDTLTNPVRTLAGAKPGKVELNVISYGGSVNISTGEVNTTITGIIYTDKHLAIYKVGKVLLPTDFFAVTKAPAKSPSLAPEPSSDTAKAPKADKDESSSSDSSQVNPTEQNSGTEKIAVYGMWMSLGLGALLMKPSAKAPKADKENSLCPDSSESSQINSTNENSGTVKIYAHGKFVSFGDVVPHRPVEDLAFAVARFYQRGNEMMPQLFWLVAWKQYHGGTNFGRTTGGPFISTSYDFDTPIDEYGIIRQPKWDHLKNVHKAIKLCEKALLATGPTITYLGPNIEAAVYNIGAVSAAFLANIAKTDAKVSFNGNSYHLPAWYVSTLPDCKSVVLNTAKINSASMISSFTTESLKEEVGSLDDSGSGWSWISEPIGISKAHSFSKFWLLEQINTTADRSDYLWYSSSIDLDAATETVLHIESLGHALHAFVNGKLAAF 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00624 593 Pfam Fasciclin domain 83 217 IPR000782 -
Gma12g00624 593 Gene3D FAS1 domain 56 218 IPR036378 -
Gma12g00624 593 SUPERFAMILY (Trans)glycosidases 329 423 IPR017853 -
Gma12g00624 593 Pfam Beta-sandwich domain in beta galactosidase 426 495 IPR041392 -
Gma12g00624 593 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 290 333 - -
Gma12g00624 593 Gene3D - 372 498 - -
Gma12g00624 593 SUPERFAMILY Galactose-binding domain-like 479 591 IPR008979 -
Gma12g00624 593 SMART fasc_3 113 218 IPR000782 -
Gma12g00624 593 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 290 333 IPR045003 -
Gma12g00624 593 PRINTS Glycosyl hydrolase family 35 signature 386 402 IPR001944 GO:0004553|GO:0005975
Gma12g00624 593 PRINTS Glycosyl hydrolase family 35 signature 366 381 IPR001944 GO:0004553|GO:0005975
Gma12g00624 593 MobiDBLite consensus disorder prediction 33 56 - -
Gma12g00624 593 MobiDBLite consensus disorder prediction 228 267 - -
Gma12g00624 593 Pfam Glycosyl hydrolases family 35 317 418 IPR031330 -
Gma12g00624 593 MobiDBLite consensus disorder prediction 30 69 - -
Gma12g00624 593 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 281 IPR045003 -
Gma12g00624 593 SUPERFAMILY FAS1 domain 69 218 IPR036378 -
Gma12g00624 593 ProSiteProfiles FAS1/BIgH3 domain profile. 71 215 IPR000782 -
Gma12g00624 593 MobiDBLite consensus disorder prediction 296 317 - -
Gma12g00624 593 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00624 Gma-Chr12 5201910 5206788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00624 329 592 Glycoside Hydrolase AT2G28470 63.004 8.23e-107 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00624 - - gmx:100781348 483.411