Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00572 ATGGCTCGCTCATTGTTCCTATGCTCACTCCTCATCCTCGCTGTCACCACCTTTTCCTCACCCACGGGTGCTCTTATCCTGACCCTAGTCAACAACTGCAACTACACCGTGTGGCCCGGCATCCAGCCCAACGCCGGCCACCCCGTCCTCGCCGGCGGCGGCCTCACCCTCCGCTCCCTCACCCACCAATCCATCCCCGTCCCCGACGCCCACTGGTCCGGCCGCGTCTGGGCCCGCACCGGCTGCTCCTACTCCGGCACCGCCTTCTCCTGCGCCAGCGGCGACTGCGGCGGCCGCCTCCAGTGCAACGGCGCCGGGGGCGCCGCACCCGCCACCCTCGCCCAGCTCGAGGTCCACCACGGCAGCAACGACTACGCCTCCTACGGCGTCAGCCTCGTCGACGGTTTTAACGTCCCCATGACCTTCACCCCGCACGAGGGCAAAGGCGTGTGCCCTGTCGTGGGTTGCCGCAACGACCTTCTCGCCACGTGTCCGCGCGTGCTGCAGCACCGTGTGCCCGCGGGTCACGGACCCGTGGTGGCTTGCAAGAGCGGGTGCGAGGCTTTTCACACGGACGAACTCTGTTGCAGGAACCACTTCAACAACCCTAACACGTGCAAGGGATCTATCTACTCCTCCTTCTTCAAGCACGCGTGCCCTGCCACCTTTACATTTGCTCATGACACCCCCTCCCTCATGCACCAGTGTTCCTCCCCGCGTGAGCTTAAGGTTATCTTTTGTCATTAA 747 0.6439 MARSLFLCSLLILAVTTFSSPTGALILTLVNNCNYTVWPGIQPNAGHPVLAGGGLTLRSLTHQSIPVPDAHWSGRVWARTGCSYSGTAFSCASGDCGGRLQCNGAGGAAPATLAQLEVHHGSNDYASYGVSLVDGFNVPMTFTPHEGKGVCPVVGCRNDLLATCPRVLQHRVPAGHGPVVACKSGCEAFHTDELCCRNHFNNPNTCKGSIYSSFFKHACPATFTFAHDTPSLMHQCSSPRELKVIFCH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00572 248 Gene3D Thaumatin 26 247 IPR037176 -
Gma12g00572 248 CDD TLP-PA 26 247 - -
Gma12g00572 248 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Gma12g00572 248 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Gma12g00572 248 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Gma12g00572 248 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Gma12g00572 248 SMART tha2 27 248 IPR001938 -
Gma12g00572 248 PIRSF PR5 1 248 IPR001938 -
Gma12g00572 248 Pfam Thaumatin family 31 247 IPR001938 -
Gma12g00572 248 PANTHER OS03G0233200 PROTEIN 7 248 IPR001938 -
Gma12g00572 248 ProSiteProfiles Thaumatin family profile. 24 248 IPR001938 -
Gma12g00572 248 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 7 248 - -
Gma12g00572 248 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00572 Gma-Chr12 4811517 4812560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00572 6 247 Receptor kinase-like Gene Family AT5G38280 35.223 1.12e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00572 - - gmx:100818233 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00572 12 4811517 4812560 Gma12g00572 12 4811517 4812560 ECH
Gma12g00572 12 4811517 4812560 Gma11g01277 11 10898490 10899676 GST