Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00543 ATGATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGAAATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGGACGAATGCGTGTTCTGAAGGAGCCGAAGGGGTATTAGGGTTTGTTAGGGGCTACGTATCTTCTGCCAGAGCTCGCAGTAATGGCCTCGTTTCCAATTTGCCTGATTTTAAATCTGTTGCAGCAAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGAATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAGATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCATGAAGCAAGTTCAAAATCTAGTCACCCCATTATTGTTGATGGGGCTATTTCTTACATCCTTTTCGTTTGGTCCTCGTGAACAGAAGCAGATTAGCTTTCAGGAGTTTAAAAACAAGCTTTTGGAACCAGGATTAGTAGACCATATTGTTGTCTCAAATAAATCAGTTGCCAAAGTATATGTAAGGAACACTCCCCTCAACCAAACAGATAATGAAGTAGCCCAAGGGACCCAACCTGCAATTGGATCTGGAGGCCAGTATAAATATTATTTCAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGCTAGAGGAAGCGCAAGAAGCTCTGGGCATTTACTCTCATGATTTTGTGCCTGTCACATATTCTTCTGAAGTGGTTTGGTACCAGGAATTGATGAGGTTTGCTCCAACACTGTTGCTTTTGGGATCTCTCTTGTATATGGGAAGGAGAATGCAAGGTGGAATTGGTGTTGGTGGCAGTGGTGGCGGCAAGGGTGCCCGTGGAATATTCAACATAGGAAAAGCACCAGTTACTAAAGTAGACAAAAATGCCAAAAACAAGATCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTTGGTGCAAAAATTCCAAAAGGTGCTCTCTTGGTTGGTCCTCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCTACAGCAGGGGAGTCTGGTGTGCCATTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTTGGTGTTGGACCATCTAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTTCACCTAGTATAGTATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGCGGGGTAGTTTTTCTGGTGCAAATGATGAACGTGAAAGTACTTTAAATCAATTGTTGGTCGAGATGGATGGTTTTGGAACCACTTCTGGAGTTGTTGTGTTGGCAGGAACAAATAGGCCTGAAATCTTAGACAAAGCTCTTCTTAGGCCTGGGCGATTTGACCGCCAGATAACAATTGACAAACCTGATATTAAAGGTCGTGACCAGATATTTCAGATCTACTTGAAGAAAATCAAACTTGATCATGAGCCTTCATATTATTCTCCAAGGCTTGCAGCCCTTACACCTGGATTTGCTGGAGCAGACATTGCTAATGTCTGCAATGAAGCTGCTCTGATTGCTGCAAGAGGTGAAGGAACACAAGTCACAATGGAACATTTTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGGTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCATGCTGTTTCAGGTTGGTTCTTGGAGCATGTTGAGCCCTTGTTGAAAGTAACTATTGTTCCACGTGGCACTGCTGCTCTTGGGTTTGCCCAATATGTTCCCAATGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAGGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGCTGACGTATGCCCAAGTAGCAGTTTATGGTTTTAGCGACAAAGTAGGCCTCCTCTCCTTCCCTCCAACTGAGGGCTCATATGAGTTTTCCAAACCATACAGCAGCAAAACTGCTGCAATCATTGATAGCGAAGTGCGTGATTGGGTGGACAAAGCATACAAACATACGATTCAGCTTATCGAGGAACACAAGGAGCAAGTTACTCAAATTGCAGAGTTGCTGCTTGAAAAAGAAGTACTTCACCAGGATGACTTGCTTCGAGTTTTGGGCGAGCGGCCGTTCAAGGCTACTGAACTCACCAATTATGATAGATTTAAGCAGGGTTTTATAGAGGAAGAGGAAAAGGTCGTGGAAAGCACCGTAGATACGCCTGAGGAAGGTGGTGGGTCTTCACCTCTAGAACCCCAGGTTGTTCCCACATAG 2433 0.4381 MIFSRIARSVSRSSRARNLLHGDGRLGTHVGLPRTNACSEGAEGVLGFVRGYVSSARARSNGLVSNLPDFKSVAANPRIRRLFCSKAPKKKNYENFYPKEKKEVPKGNDKKYESKDNSNANTEDSGNFQEAFMKQVQNLVTPLLLMGLFLTSFSFGPREQKQISFQEFKNKLLEPGLVDHIVVSNKSVAKVYVRNTPLNQTDNEVAQGTQPAIGSGGQYKYYFNIGSVESFEEKLEEAQEALGIYSHDFVPVTYSSEVVWYQELMRFAPTLLLLGSLLYMGRRMQGGIGVGGSGGGKGARGIFNIGKAPVTKVDKNAKNKIYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCSPSIVFIDEIDAIGRARRGSFSGANDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPEILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSPRLAALTPGFAGADIANVCNEAALIAARGEGTQVTMEHFEAAIDRIIGGLEKRNKVISKLERRTVAYHEAGHAVSGWFLEHVEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKLTYAQVAVYGFSDKVGLLSFPPTEGSYEFSKPYSSKTAAIIDSEVRDWVDKAYKHTIQLIEEHKEQVTQIAELLLEKEVLHQDDLLRVLGERPFKATELTNYDRFKQGFIEEEEKVVESTVDTPEEGGGSSPLEPQVVPT 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00543 810 MobiDBLite consensus disorder prediction 95 125 - -
Gma12g00543 810 Pfam FtsH Extracellular 142 244 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Gma12g00543 810 MobiDBLite consensus disorder prediction 95 118 - -
Gma12g00543 810 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 32 809 - -
Gma12g00543 810 SUPERFAMILY FtsH protease domain-like 576 765 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma12g00543 810 Pfam AAA+ lid domain 522 561 IPR041569 -
Gma12g00543 810 PANTHER ATP-DEPENDENT PROTEASE 32 809 - -
Gma12g00543 810 Gene3D Peptidase M41 576 777 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma12g00543 810 ProSitePatterns AAA-protein family signature. 463 481 IPR003960 GO:0005524|GO:0016887
Gma12g00543 810 Gene3D - 310 493 IPR027417 -
Gma12g00543 810 Pfam ATPase family associated with various cellular activities (AAA) 361 492 IPR003959 GO:0005524|GO:0016887
Gma12g00543 810 SMART AAA_5 356 495 IPR003593 -
Gma12g00543 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 566 IPR027417 -
Gma12g00543 810 Coils Coil 228 248 - -
Gma12g00543 810 CDD AAA 357 493 - -
Gma12g00543 810 Pfam Peptidase family M41 576 757 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma12g00543 810 Gene3D - 146 259 - -
Gma12g00543 810 Gene3D - 494 570 - -
Gma12g00543 810 MobiDBLite consensus disorder prediction 786 810 - -
Gma12g00543 810 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 785 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gma12g00543 810 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 260 759 IPR005936 GO:0004176|GO:0004222|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00543 Gma-Chr12 4529688 4535591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00543 1 810 Miscellaneous Gene Families AT2G29080 74.725 0.0 1181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00543 K08956 - gmx:100806656 1550.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00543 12 4529688 4535591 Gma12g00543 12 4529688 4535591 ECH
Gma12g00543 12 4529688 4535591 Gma11g01244 11 10619433 10625191 GST