Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00541 ATGACCACAACTATTCCTTCATCACATTCATTTTTTGTGGCATTCCTCTTTGCCACCAGCTTCCTTTGGTCTTTTCCCGAATTTGCTCTCGCTACTTCAAAGCATGGAAGTGTCACAAGGCACTACAAGTTTGATATAAGGCTGAGAAACATTACGAGGCTGTGCCACACGAAGAGCATGGTTACCGTGAACGGAAAGTTCCCTGGGCCTAGAGTTGTTGCAAGAGAAGGTGACAGAATAGTGGTAAAGGTGGTTAATCATGTTCCCAACAATGTCAGCATACACTGGCATGGAGTGAGACAGCTTCAAAGTGGATGGGCAGATGGTCCATCTTACATAACTCAATGCCCCATTCAAACTGGCCAGAGTTATGTGTACAACTTCACAATTGTTGGACAAAGAGGAACCCTCTTCTGGCATGCTCACATTTCATGGTTAAGAGCCACTCTCTATGGACCCCTAATCCTCCTCCCTAGGCGCAACGAATCTTACCCATTTGAGAAACCCTACAAGGAAGTTCCCATCCTCTTTGGTGAGTGGTGGAATGCTGATCCAGAGGCTGTTATTGCACAAGCCCTTCAGACAGGGGCTGGCCCAAATGTCTCTGATGCCTACACTTTTAACGGTCTTCCTGGACCCCTCTACAATTGCTCCAACAACGAAACAGACACGTTCAGGTTAAAGGTGAAGCCAGGGAAGACATATCTTCTTCGTTTGATCAATGCTGCACTCAATGATGAACTCTTTTTCAGCATTGCAAACCACACCTTGGTAACTGTTGAAGCTGATGCTACTTACGTTAAACCTTTCGAGTCAGAGATCATCGTAATAGGGCCAGGACAAACCTCAAACTTTCTGTTAAAGACAAAACCTGAGTACCCAAATGTCAATTTCTTGATGCTAGCAAGACCATATTTCACTGGCATGGGAACTTTCGACAATTCCACAGTTGCTGGCATTCTTGAGTACAAGAAACCGCTTGTTGCTCCAAAAAACACTATTCCCACTTTGAAACCCTCTCTTCCAGCCATCAATGACACTTCCTTCGTTGCCAACTTCAGTAGTAAATTCCTCAGTTTGAACACTGACAAGTACCCTGCAAAGGTGCCTCAAACCGTTGACAAGAGCTTCTTCTTCACAATTGGACTTGGAACAAGTCCTTGCCCCAAAAACCAAACATGCCAAGGACCAAACAACAGTTCAAAGTTTGCAGCCTCAATGAACAATATATCCTTCACTCTTCCTTCCATAGCACTTCTTCAGCAACATTTCTTCGGCCAAGCTAATAATGGCATTTACACCACTGATTTCCCTGCCATGCCACTCATGCCATTCAACTACACGGGGACCCCACCGAACAACACAAGGGTCAGTAATGGAACAAAGACTGTGGTGATACCCTTTAACACAAGGGTGCAAGTGGTGCTCCAAGACACTAGCATTTTGGGAGCTGAGAGCCACCCTTTGCACCTTCATGGCTTTAACTTCTATGTTGTGGGTCAAGGCTTTGGGAACTTTAATCCTAACACTGACCCTCCAAAATTCAACCTTGTTGACCCCGTTGAAAGGAACACTGTTGGTGTGCCCTCTGGTGGTTGGGTTGCAATCAGATTCCTTGCTGACAACCCAGGTGTTTGGCTAATGCATTGCCATTTTGATGTCCACCTTAGTTGGGGGTTGAGGATGGCTTGGATTGTTGAGGATGGGAAGCTACCTAATCAGAAGTTGCCTCCTCCACCAGCTGATCTCCCTAAGTGTTGA 1761 0.4571 MTTTIPSSHSFFVAFLFATSFLWSFPEFALATSKHGSVTRHYKFDIRLRNITRLCHTKSMVTVNGKFPGPRVVAREGDRIVVKVVNHVPNNVSIHWHGVRQLQSGWADGPSYITQCPIQTGQSYVYNFTIVGQRGTLFWHAHISWLRATLYGPLILLPRRNESYPFEKPYKEVPILFGEWWNADPEAVIAQALQTGAGPNVSDAYTFNGLPGPLYNCSNNETDTFRLKVKPGKTYLLRLINAALNDELFFSIANHTLVTVEADATYVKPFESEIIVIGPGQTSNFLLKTKPEYPNVNFLMLARPYFTGMGTFDNSTVAGILEYKKPLVAPKNTIPTLKPSLPAINDTSFVANFSSKFLSLNTDKYPAKVPQTVDKSFFFTIGLGTSPCPKNQTCQGPNNSSKFAASMNNISFTLPSIALLQQHFFGQANNGIYTTDFPAMPLMPFNYTGTPPNNTRVSNGTKTVVIPFNTRVQVVLQDTSILGAESHPLHLHGFNFYVVGQGFGNFNPNTDPPKFNLVDPVERNTVGVPSGGWVAIRFLADNPGVWLMHCHFDVHLSWGLRMAWIVEDGKLPNQKLPPPPADLPKC 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00541 586 Pfam Multicopper oxidase 172 325 IPR001117 -
Gma12g00541 586 Gene3D - 170 362 IPR008972 -
Gma12g00541 586 PANTHER LACCASE 10 586 - -
Gma12g00541 586 ProSitePatterns Multicopper oxidases signature 2. 549 560 IPR002355 GO:0005507
Gma12g00541 586 TIGRFAM laccase: laccase 39 586 IPR017761 GO:0046274|GO:0048046|GO:0052716
Gma12g00541 586 Pfam Multicopper oxidase 49 159 IPR011707 GO:0005507
Gma12g00541 586 PANTHER MULTI-COPPER OXIDASE 10 586 IPR045087 -
Gma12g00541 586 CDD CuRO_1_LCC_plant 42 158 IPR034288 GO:0005507
Gma12g00541 586 SUPERFAMILY Cupredoxins 366 586 IPR008972 -
Gma12g00541 586 CDD CuRO_2_LCC_plant 173 323 IPR034285 -
Gma12g00541 586 Pfam Multicopper oxidase 448 569 IPR011706 GO:0005507|GO:0016491
Gma12g00541 586 Gene3D - 27 157 IPR008972 -
Gma12g00541 586 SUPERFAMILY Cupredoxins 167 359 IPR008972 -
Gma12g00541 586 Gene3D - 389 586 IPR008972 -
Gma12g00541 586 SUPERFAMILY Cupredoxins 35 190 IPR008972 -
Gma12g00541 586 CDD CuRO_3_LCC_plant 432 569 IPR034289 GO:0005507
Gma12g00541 586 ProSitePatterns Multicopper oxidases signature 1. 544 564 IPR033138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00541 Gma-Chr12 4505826 4509513 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00541 K05909 - gmx:100811833 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00541 12 4505826 4509513 Gma11g01242 11 10596982 10601234 GST