Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00536 ATGTTGTCTGAATTGGGAAGAAGACCTATGCTTGGGAGTAACGAGGGTTCTTTTGGTGATGAATTGGAGAAGGAGATAGGGATGTTACTTCGTGAGCAACGCAGACAAGAGGCTGATGATCGTGAGCGAGAGCTTAATATTTTTAGGAGTGGATCGGCGCCTCCAACTGTGGACGGTTCTTTGAGTGCCGTAGGAGGGTTGTTTGCTGGTGGTGGTGGTGGTGGTGCTCCTGCTGCCTTTTCAGAGTTTCGAGGAACGAAGGATGTGAATGGGATTGCTTCTGAGGAAGAGCTTAGGTCTGATCCAGCGTATCTTTCATACTACTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGATTTCAACAAAGACTTAAAGGTGGAGCTTCTGCTCTAGGTGGAATTGGAGATAGGAGGAAAGTAAACAGGACTGATGATAATGCTGGAAGATCGCTTTTTGCTACCCCACCAGGTTTTAACATGAGGAAACAAGAGAGTGAGGTGGATAATGAAAAAACAAGAGGTTCGGCCGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGACTAGGGCTGAGCAAACAGAAGAGCTTTGCAGAAATTTTTCAGGATGATTTGGGGCATAATACCTCTATCGGATGCCTTCCTTCCCGTCCAGCCAGTCGTAATACATTTGATGACACTGATATCATTAGTTCTGCTGAAGCAGAGTTGGCTCATGTTCAAGGATCATCTGCAGCCCAAAATGTTGGCTTACCAGCTTCATATTCTTATGCTGTTGCAGTAGGATCTTCCTTGTCAAGAAGCACTACTCCTGATCCACAACTTGTTGCTAGGGCTCCCAGTCCCTGCATCACGCCTATTGGTGGCGGCAGAGCCATTGCTTCTGACAAGAGAGCTATTGCCAATCCAGATGCATTTAATGGTGTTTCATCTGGCATCAATGAGTCAGCAGATCTTGTGGCTGCATTGTCAGTGATGAACTTGTCAGCAGATTATGTGTTAGATGGTGCAAACCATTTGCCATCACAGGTTGAATCAGATGTAGATAGTCATAAGAGATATCTTTTTGGTAGGCTAGGTGGTCAAGATCATGGGAAGCAACAGGCTTATTTAAAGAAATCTGAATCAGCACACTTGCAAAATTCAAGTAAGAGCAGCAGGAGTGGGTCAGGTCTCAACAATCCATCCTTGGATAGGCAGGTTGAGCTACAAAAGTCTACCGTTCCTTCCAATAACTCATATTTCAAAGGATCGCCTACCTCCCATTTTAGTAGAGGAGGAAGTATGCCACTTCAGTACCAGCCTTTAGATGGTACAAATTCATCATTTACTAACTACGGTATGAGTGGCTATGCTGGAAATCCAGCACTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATCTGCCACCCTTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCAGCCCCTCGAATGGACTCGAGAATTCTTGGAGGTGGTTTGGCTTCTGGAGCTGCTGCTCCATCTGATGTGCATAATCTTGGTAGGATGGGAAATCAAATTCAAGGCAGTGCTCTTCAGGCTCCTTTTGTTGATCCCATGTATCTTCAGTACCTGAGGACACCTGAGTTTGCTGCAGCACAACTTGCTGCTCTCAATGACCCCTCTGTGGACAGGAACTACTTGGGCAATTCATACATGAATTTGCTTGAGCTCCAGAAAGCTTATCTTGGGTCTGTCCTCTCACCTCAGAAATCCCAATACAATGTACCGCCGGGTGGTAAATCAGGCAGCTTCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGCTGGGTTGTCTTACCCAGGAAGTCCTATGGCAAACTCTGTTGTGTCCACTTCTCCAGTTGGATCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCATTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTCATGGGACCTTGGCATGTAGATAATGAGAACATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACGAAGTGTTTTGAGCTGTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGTCGATTTATTCAACAAAAGCTAGAAACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAGAAAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGGCACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTTATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTTCCTGAAGATGCAATCCACTTTATTGTGTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGAGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGATGAAATATTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTGACCTTTGGTGGTCCTTCTGAGCGCCAATTACTAGTGTGTGAGATGCTTGGCACCACAGATGAAAATGAGCCTCTTCAGGCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACTTGTGATGATCAACAACGCGAGCTGATTCTTTACCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATTGTCGCCCGTGTGGAGAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCTGCTTAG 3102 0.4429 MLSELGRRPMLGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVDGSLSAVGGLFAGGGGGGAPAAFSEFRGTKDVNGIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASALGGIGDRRKVNRTDDNAGRSLFATPPGFNMRKQESEVDNEKTRGSAEWGGDGLIGLPGLGLSKQKSFAEIFQDDLGHNTSIGCLPSRPASRNTFDDTDIISSAEAELAHVQGSSAAQNVGLPASYSYAVAVGSSLSRSTTPDPQLVARAPSPCITPIGGGRAIASDKRAIANPDAFNGVSSGINESADLVAALSVMNLSADYVLDGANHLPSQVESDVDSHKRYLFGRLGGQDHGKQQAYLKKSESAHLQNSSKSSRSGSGLNNPSLDRQVELQKSTVPSNNSYFKGSPTSHFSRGGSMPLQYQPLDGTNSSFTNYGMSGYAGNPALASLMTNQLGTGNLPPLFENVAAASAMAAPRMDSRILGGGLASGAAAPSDVHNLGRMGNQIQGSALQAPFVDPMYLQYLRTPEFAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSVLSPQKSQYNVPPGGKSGSFTPHGYYGNPAYGAGLSYPGSPMANSVVSTSPVGSGSPVRHNELNMHFASGMRNLAGVMGPWHVDNENIDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQKRELANKLLGHVLALSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVCEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILYRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQAPPQPA 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00536 1033 Pfam Pumilio-family RNA binding repeat 964 990 IPR001313 GO:0003723
Gma12g00536 1033 Pfam Pumilio-family RNA binding repeat 701 735 IPR001313 GO:0003723
Gma12g00536 1033 Pfam Pumilio-family RNA binding repeat 816 839 IPR001313 GO:0003723
Gma12g00536 1033 Pfam Pumilio-family RNA binding repeat 919 951 IPR001313 GO:0003723
Gma12g00536 1033 Pfam Pumilio-family RNA binding repeat 737 770 IPR001313 GO:0003723
Gma12g00536 1033 Pfam Pumilio-family RNA binding repeat 884 915 IPR001313 GO:0003723
Gma12g00536 1033 Pfam Pumilio-family RNA binding repeat 773 806 IPR001313 GO:0003723
Gma12g00536 1033 Pfam Pumilio-family RNA binding repeat 845 880 IPR001313 GO:0003723
Gma12g00536 1033 ProSiteProfiles Pumilio RNA-binding repeat profile. 733 768 IPR001313 GO:0003723
Gma12g00536 1033 ProSiteProfiles Pumilio RNA-binding repeat profile. 697 732 IPR001313 GO:0003723
Gma12g00536 1033 ProSiteProfiles Pumilio RNA-binding repeat profile. 950 991 IPR001313 GO:0003723
Gma12g00536 1033 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 677 1017 IPR033133 GO:0003723
Gma12g00536 1033 ProSiteProfiles Pumilio RNA-binding repeat profile. 769 804 IPR001313 GO:0003723
Gma12g00536 1033 ProSiteProfiles Pumilio RNA-binding repeat profile. 805 840 IPR001313 GO:0003723
Gma12g00536 1033 ProSiteProfiles Pumilio RNA-binding repeat profile. 878 913 IPR001313 GO:0003723
Gma12g00536 1033 SUPERFAMILY ARM repeat 680 1014 IPR016024 -
Gma12g00536 1033 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1025 - -
Gma12g00536 1033 SMART pum_5 733 768 IPR001313 GO:0003723
Gma12g00536 1033 SMART pum_5 769 804 IPR001313 GO:0003723
Gma12g00536 1033 SMART pum_5 914 949 IPR001313 GO:0003723
Gma12g00536 1033 SMART pum_5 805 840 IPR001313 GO:0003723
Gma12g00536 1033 SMART pum_5 878 913 IPR001313 GO:0003723
Gma12g00536 1033 SMART pum_5 841 877 IPR001313 GO:0003723
Gma12g00536 1033 SMART pum_5 956 991 IPR001313 GO:0003723
Gma12g00536 1033 SMART pum_5 697 732 IPR001313 GO:0003723
Gma12g00536 1033 MobiDBLite consensus disorder prediction 1 24 - -
Gma12g00536 1033 Pfam Nucleic acid binding protein NABP 288 696 IPR012940 -
Gma12g00536 1033 Gene3D - 677 1023 IPR011989 -
Gma12g00536 1033 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1025 - -
Gma12g00536 1033 CDD Pumilio 693 1013 IPR033712 GO:0003723
Gma12g00536 1033 ProSiteProfiles Pumilio RNA-binding repeat profile. 914 949 IPR001313 GO:0003723
Gma12g00536 1033 ProSiteProfiles Pumilio RNA-binding repeat profile. 841 877 IPR001313 GO:0003723
Gma12g00536 1033 MobiDBLite consensus disorder prediction 383 441 - -
Gma12g00536 1033 MobiDBLite consensus disorder prediction 141 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00536 Gma-Chr12 4439585 4445778 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00536 K17943 - gmx:100779564 1947.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00536 12 4439585 4445778 Gma11g01237 11 10521148 10527248 GST