Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00525 ATGGCTGAGGCAAGCATTGGCAGCAAAAGCAGCAGATGGTCTTTACAGGGAATGACAGCTCTCGTCACCGGTGGATCCAAAGGAATCGGATATGCTATCGTGGAGGAGTTGGCACAGCTTGGAGCCACTGTGCACACTTGCGCTCGGAACGAAGCTGAACTCAATGAATCCTTAAATGAATGGAACACAAAAGGATACAGAGTAACTGGTTCCGTCTGTGACGTGGCGTCTCGTGCAGAAAGACAAGACCTCATTGCTAGACTCTCCAATGAGTTTAATGGCAAACTCAATATCCTTGTAAACAACGTGGGAACAAACGTACCGAAACATACCCTTGATGTTACGGAGGAAGACTTCTCATTTCTGATAAATACGAATCTTGAATCTGCTTACCACCTAAGCCAGCTTGCACATCCTCTCCTGAAAGCTTCAGAGGCTGCAAACATCATTTTTATATCCTCCATTGCTGGTGTGCTATCAATAGGAGTAGGATCCACTTATGGTGCAACAAAAGGAGCAATGAACCAACTGACTAAAAATTTGGCATGTGAGTGGGCCAAAGACAATATAAGGACTAATTGCGTTGCACCAGGGCCAATCAAAACCCCTCTCGGTGACAAGCATTTTAAAAATGAAAAACTTCTTAATGCTTTCATTTCGCAAACCCCCCTTGGACGGATTGGAGAAGCAGAGGAAGTGTCTTCATTGGTGGCATTCCTCTGCTTACCTGCAGCCTCTTACATAACAGGACAGACCATTTGTGTTGATGGTGGATTAACAGTGAATGATGTGTCCCACGACAACATCAATTTTTCTTGTTCAATTCACTTCAAACCTAAAGCCCACGACAATTCCCAATTCATTCTCTCCATTTCCACCACCACTTCACTTCAACTGATTGCTGAATCAAATGGAACACGAGAAAGCCCCTATCTTGGCAGACTCATCTTGCAGTTCTGTTTGTCCTTTTTCCGGACAAGAAAACAGTGTTGTGGCATCAAAGGAGTCTTCAAATGTGGGCTTCAGGTTGGGAGGCAACACCGCACCAATCTTTTGGATACAATCGTCTTGAGGTTTTGGGGGCTCTTGCatcatgatcatGGGAAGGAGGAACAATCTATTATAACTGATGAGGAGAATGTTACCCTGGTTTCAAGTATTCAGACAAACACTAATGTCTTGAACATAAATCTGCAGGGGGCATATTTGCATGTCATGGCTGATATGATTCAATCTATTGGAGTGATGATTGCTGGAGCCATAATATGGGCAAAACCTGAGTGGTTTATGGTTGACCTTGTGTGTACTCTTCTATTTTCTGTTTTGTCTTTAAGTACTACTCTTCCCATGCTTAGGAATATTTATGGCATTCTGATGGAAAGGACACCAAGTGAGATCGATATTAGTAAGCTGGAAAATGGCCTCCTAAATATCAAGGGAGTGCAGGATGTTCATGACTTGCACGTTTGGGCTATAACTGTAGGAAAATGTGTACTGTCTTGCCACGTAGTGGCTGAGCCTGGCATAAGTTCCATTGATTTACTTGGCACGATTAAACATTACTGTGAAAAAAAGAATCAAATACAACATGTAACCATACAAATTGAGTAG 1611 0.4271 MAEASIGSKSSRWSLQGMTALVTGGSKGIGYAIVEELAQLGATVHTCARNEAELNESLNEWNTKGYRVTGSVCDVASRAERQDLIARLSNEFNGKLNILVNNVGTNVPKHTLDVTEEDFSFLINTNLESAYHLSQLAHPLLKASEAANIIFISSIAGVLSIGVGSTYGATKGAMNQLTKNLACEWAKDNIRTNCVAPGPIKTPLGDKHFKNEKLLNAFISQTPLGRIGEAEEVSSLVAFLCLPAASYITGQTICVDGGLTVNDVSHDNINFSCSIHFKPKAHDNSQFILSISTTTSLQLIAESNGTRESPYLGRLILQFCLSFFRTRKQCCGIKGVFKCGLQVGRQHRTNLLDTIVLRFWGLLHHDHGKEEQSIITDEENVTLVSSIQTNTNVLNINLQGAYLHVMADMIQSIGVMIAGAIIWAKPEWFMVDLVCTLLFSVLSLSTTLPMLRNIYGILMERTPSEIDISKLENGLLNIKGVQDVHDLHVWAITVGKCVLSCHVVAEPGISSIDLLGTIKHYCEKKNQIQHVTIQIE 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00525 536 PANTHER TROPINONE REDUCTASE 3 264 IPR045000 GO:0016491
Gma12g00525 536 Pfam Enoyl-(Acyl carrier protein) reductase 26 260 - -
Gma12g00525 536 SUPERFAMILY Cation efflux protein transmembrane domain-like 395 460 IPR027469 -
Gma12g00525 536 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Gma12g00525 536 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Gma12g00525 536 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Gma12g00525 536 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Gma12g00525 536 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Gma12g00525 536 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Gma12g00525 536 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 463 536 IPR036837 -
Gma12g00525 536 TIGRFAM CDF: cation diffusion facilitator family transporter 362 536 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Gma12g00525 536 Pfam Cation efflux family 372 459 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Gma12g00525 536 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 3 264 - -
Gma12g00525 536 Gene3D - 3 264 - -
Gma12g00525 536 Gene3D Cation efflux protein transmembrane domain 352 458 IPR027469 -
Gma12g00525 536 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
Gma12g00525 536 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Gma12g00525 536 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Gma12g00525 536 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Gma12g00525 536 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 261 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00525 Gma-Chr12 4351232 4361049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00525 1 265 Miscellaneous Gene Families AT2G29150 63.910 3.08e-116 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00525 K08081 - gmx:100780806 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00525 12 4351232 4361049 Gma12g00525 12 4351232 4361049 ECH