Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00521 ATGGCGAGTCGTTCCTTCTTTAAAAATTTGAAAAACCGTGATTTGGCTTCGTTATTACTGGTAGAATTTACGAGAAGTAGCAAACCCATCAAACACATTTCTTCAACTTCATCACCCTTTGTTGAATGCAATTCGTTCAAAACGGCGTCGTGTTTTCGGCAATACCACGACGGAAGGCCCAGAGGGCCCCTTTGGAAAGGAAAAAAGCTCATTGGCAAAGAAGCGCTTTTTGTCATATCGGGGTTTAAGAGGTTTAACGATGACGAGGATAAGCTTCACAAGTTCATCAAAACTCACGTTCTCAGACTCTTGAAGATGGACATGATCGCTGTCCTCACCGAACTTGAGCGCCAAGAACAAGTTTCTCTCGCTCTCATGATGTTTAAGGTGATGCAAAAGCAAGATTGGTACAAGCCGGATGCATACCTCTATAAGGACTTGATCATTGCATTGGCAAGGGCTAAGAAAATGGATGAAGTATTGCAATTGTGGGAAAGCATGAGAGAGGAAAATCTGTTCCCCGATTCCCAGACTTATACTGAAGTTATAAGGGGCTTCTTGAACTATGGATCTCCCGCGGATGCCATGAACATATACGAGGACATGAAGAATTCTCCTGATCCGCCAGAGGAGTTGCCATTCAGGATTTTGTTGAAAGGACTTCTGCCCCATCCTCTTTTGAGAAACAAAGTGAAACAGGATTTTGAGGAGATTTTTCCTGATTCAAGTATCTATGATCCACCACAAGAGATATTTGGCGCACGCTGA 768 0.4323 MASRSFFKNLKNRDLASLLLVEFTRSSKPIKHISSTSSPFVECNSFKTASCFRQYHDGRPRGPLWKGKKLIGKEALFVISGFKRFNDDEDKLHKFIKTHVLRLLKMDMIAVLTELERQEQVSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWESMREENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00521 255 Pfam PPR repeat family 139 186 IPR002885 -
Gma12g00521 255 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 4 254 - -
Gma12g00521 255 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 4 254 IPR044795 -
Gma12g00521 255 Gene3D Tetratricopeptide repeat domain 69 255 IPR011990 GO:0005515
Gma12g00521 255 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Gma12g00521 255 TIGRFAM PPR: pentatricopeptide repeat domain 144 175 IPR002885 -
Gma12g00521 255 TIGRFAM PPR: pentatricopeptide repeat domain 178 204 IPR002885 -
Gma12g00521 255 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00521 Gma-Chr12 4341499 4342704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00521 77 252 Miscellaneous Gene Families AT4G11690 23.596 2.32e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00521 - - gmx:100306428 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00521 12 4341499 4342704 Gma12g00521 12 4341499 4342704 ECH
Gma12g00521 12 4341499 4342704 Gma11g01222 11 10433547 10436001 GST