Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00419 ATGTTGTCGGCTTATGTTGGTTCTGGTGGGTATGAGCCTGAGGCACTTGATTTGTTTATTAGAATGCAGTCTGCTCGTGAGACAATTGGATACGCCCAGAATGGCTATATGGAGAAATCACTTACCGTGTTTGTTGAGATGATTGAAAATGGTATTGGTTTCAATGAACACACTTTAGCAAGTGTTTTGAGTGCCTGCTCTGCTCTAAAATGTTTAAAACTTGGCAAATATGCAGAGTTAGTCTATGCAAAAATTGGGATTAAATGTTCATTTGCAGTTGTGTCGTTGATTGCAGCCTACTCATCTCAAGGTAACATGACAGAAGCCCAAAGGCTTTTTGATTCACTGTTGGAAAGAAACTCGGTTGTGTGGACAGCTTTATGTTCTGGCTATGTCAAATCACAACAATGTGAGGCAGTCTTCAAACTTTTCAGAGAGTGTAGAACTAAAGAAGCACTAGTTCCTGATGCAATGATCATTATCAGTGTGCTTGGTGCCTGTGCAATGCAAGCTGATCTTAGTTTGGGAAAGCAAATTCGTGCTTACATCTTGAGAATGAGATTTAAGGTGGATAAGAAATTACTGAGTGCTTTGGTAGATATGTACTCAAAATGTGGGAATGTTGCATATGCCAAGAAAATCTTCCGACTTGTTACTGGTAGTGATAGAGATGCAATCTTATATAATGTCATGATAGCTGGTTATGCTCATCATGGTTTGGAAAATAAAGCAATTCAGCTTTTTCAGGAAATGTTGAATAAAAGTGTCAAGCCTGACAAAGTCACTTTTGTTGCACTTTTATCAGCTTGTCGACGCCATGGATTAGTAGAACTAGGAGAGCAATTTTTTTATTTCCATGGAACAAGATTACAACATATTGCATGA 885 0.3842 MLSAYVGSGGYEPEALDLFIRMQSARETIGYAQNGYMEKSLTVFVEMIENGIGFNEHTLASVLSACSALKCLKLGKYAELVYAKIGIKCSFAVVSLIAAYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQCEAVFKLFRECRTKEALVPDAMIIISVLGACAMQADLSLGKQIRAYILRMRFKVDKKLLSALVDMYSKCGNVAYAKKIFRLVTGSDRDAILYNVMIAGYAHHGLENKAIQLFQEMLNKSVKPDKVTFVALLSACRRHGLVELGEQFFYFHGTRLQHIA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00419 294 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 157 284 - -
Gma12g00419 294 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Gma12g00419 294 Pfam PPR repeat 196 216 IPR002885 -
Gma12g00419 294 Pfam PPR repeat 95 120 IPR002885 -
Gma12g00419 294 Pfam PPR repeat 122 148 IPR002885 -
Gma12g00419 294 Pfam PPR repeat 30 52 IPR002885 -
Gma12g00419 294 Gene3D Tetratricopeptide repeat domain 180 285 IPR011990 GO:0005515
Gma12g00419 294 Gene3D Tetratricopeptide repeat domain 88 179 IPR011990 GO:0005515
Gma12g00419 294 TIGRFAM PPR: pentatricopeptide repeat domain 30 53 IPR002885 -
Gma12g00419 294 TIGRFAM PPR: pentatricopeptide repeat domain 227 259 IPR002885 -
Gma12g00419 294 Pfam PPR repeat family 224 270 IPR002885 -
Gma12g00419 294 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 30 163 - -
Gma12g00419 294 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 157 284 - -
Gma12g00419 294 Gene3D Tetratricopeptide repeat domain 1 82 IPR011990 GO:0005515
Gma12g00419 294 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00419 Gma-Chr12 3442846 3444152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00419 30 283 Glycoside Hydrolase AT3G49170 31.907 1.53e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00419 - - gmx:100803987 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00419 12 3442846 3444152 Gma11g01112 11 9413099 9415177 GST