Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00413 ATGCTATCTCCGATGGCTCTCTCTGCGCATATTTGCCGTTTCCCCGCCACACGCGCTGACACTTCTTTGCCGGAGAGTCTCACCAGAATCCGGTGCCGGAAACCTCTCTCCGTCCGATGCTCCGGCGATTCCACTTCCGGCTCTGTGGGTTCGGAGTTCGATCCGAAGGTGTTTCGGAAGAACCTTACTCGGAGTAAGAATTATAACCGCAAAGGATTTGGGTACAAGGAAGAGACCCTCCAACTCATGAATCGCGAGTACACCAGTGATATCATTAAGACTTTGAAGGAAAATGGGTATGAGTATACATGGGGTACTGTCACGGTGAAGCTTGCTGAAGCCTATGGATTCTGTTGGGGAGTTGAGAGGGCTGTTCAAATTGCTTATGAGGCCAGAAAACAGTTTCCTACTGAGACAATTTGGCTTACCAATGAAATCATCCACAACCCCACTGTCAATAAGCGGCTAGAGGAGATGAATGTTCAAAATATTCCTCTCGAAGAAGGTGGAAAACAATTTGATGTTGTCAACAAGGGTGATGTAGTCATATTGCCAGCTTTTGGAGCGGCAGTGGAAGAGATGTTGACTTTGAGCGAGAAAAATGTTCAGATCGTTGATACAACTTGCCCATGGGTTGCAAAGGTATGGAATTCTGTTGAAAAGCACAAGCAACGAGATTATACCTCTGTAATTCATGGTAAATATGCCCATGAGGAAACTGTAGCAACTGCTTCTTTTGCTGGAAAATATATAATTGTGAAGAATATGGCGGAGGCTGAATATGTTTGCGACTATATTCTTGGTGGTGAATTAAATGGATCCAGTTCAACCAAGGAAGCATTTTTAGAGAAATTTAAATTTGCAGTTTCTGAGGGCTTTGATCCAGACAGAGATCTGATTAAAGCTGGCATCGCAAATCAGACAACGATGCTCAAGGGAGAGACAGAAGAGATTGGGAAACTACTGGAGAGGTCTATGATGCGCAAATATGGTGTGGAGAACATCAATGAGCACTTCATGAGCTTCAATACAATTTGTGATGCTACTCAGGAGAGACAAGATGCTATGTACAAATTGGTGGAGGAAGATCTGGATCTAATGTTAGTAGTTGGTGGATGGAACTCTAGCAATACATCACACCTGCAAGAGATAGCGGAGGAACGTGGAATTCCTTCTTATTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAGGTTGTTGAAGATGCACTCATCAGGGTTTTTGACTTGAAACGGGAAGAGGCGATGCAACTTGCATAG 1389 0.442 MLSPMALSAHICRFPATRADTSLPESLTRIRCRKPLSVRCSGDSTSGSVGSEFDPKVFRKNLTRSKNYNRKGFGYKEETLQLMNREYTSDIIKTLKENGYEYTWGTVTVKLAEAYGFCWGVERAVQIAYEARKQFPTETIWLTNEIIHNPTVNKRLEEMNVQNIPLEEGGKQFDVVNKGDVVILPAFGAAVEEMLTLSEKNVQIVDTTCPWVAKVWNSVEKHKQRDYTSVIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGELNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKAGIANQTTMLKGETEEIGKLLERSMMRKYGVENINEHFMSFNTICDATQERQDAMYKLVEEDLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPEGPITIGVTSGASTPDKVVEDALIRVFDLKREEAMQLA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00413 462 Gene3D - 343 461 - -
Gma12g00413 462 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 6 460 - -
Gma12g00413 462 CDD lytB_ispH 109 450 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Gma12g00413 462 Gene3D - 209 342 - -
Gma12g00413 462 Gene3D - 118 208 - -
Gma12g00413 462 Pfam LytB protein 109 446 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Gma12g00413 462 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 109 446 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Gma12g00413 462 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 107 454 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00413 Gma-Chr12 3395080 3398653 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00413 K03527 - gmx:100818067 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00413 12 3395080 3398653 Gma12g00413 12 3395080 3398653 ECH
Gma12g00413 12 3395080 3398653 Gma11g01107 11 9349855 9353426 GST