Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00400 ATGGTACCTCAAGCTTTGTCAGTGCCTGCGAGTTCCAGCTTGGCTATCGCTTCTCGCACCAGAAGTCCCTCCCACCTCGTATTTTCTCAAAGAAACCCGTGCTCGATAGCTTCTTCCTTGCCAAACCCATATGGCCATTCATCGGAAGTTGGGTTATCAAGTAAAAGCCGTGGCTTTCCTTTAAAACATGATGAGAAAAATATCCATGGTGCTAGTACAAGTTATGGTGCAATTGAAGCCAAGGGGAATCCGCCGATAACTCCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCACATCTGTTTTGTTCAGGAATCGTATAATCTTCATAGGTCAGCCAGTCAATTCACAAGTGGCTCAGAGAGTTATATCCCAGCTTGTGACTCTAGCTACTATAAATGAAAATGCAGACATACTGGTATATATAAATTGTCCTGGTGGAAGCACATATTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACCGTGTGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCTGGAGGTGAGAAGGGAATGCGCTATGCGATGCCAAATGCTCGCATAATGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGTTTTTACTGGACAGCCATTAGAGAAGGTGCAACAGTACACAGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA 822 0.4489 MVPQALSVPASSSLAIASRTRSPSHLVFSQRNPCSIASSLPNPYGHSSEVGLSSKSRGFPLKHDEKNIHGASTSYGAIEAKGNPPITPAVMTPGGPLDLTSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSVFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00400 273 SUPERFAMILY ClpP/crotonase 97 271 IPR029045 -
Gma12g00400 273 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 86 272 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00400 273 PRINTS Clp protease catalytic subunit P signature 98 113 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00400 273 PRINTS Clp protease catalytic subunit P signature 138 158 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00400 273 PRINTS Clp protease catalytic subunit P signature 169 186 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00400 273 PRINTS Clp protease catalytic subunit P signature 190 209 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00400 273 PRINTS Clp protease catalytic subunit P signature 247 266 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00400 273 Pfam Clp protease 98 271 IPR023562 -
Gma12g00400 273 Gene3D - 84 273 - -
Gma12g00400 273 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 15 273 IPR023562 -
Gma12g00400 273 CDD S14_ClpP_2 98 268 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma12g00400 273 ProSitePatterns Endopeptidase Clp histidine active site. 191 204 IPR033135 -
Gma12g00400 273 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 15 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00400 Gma-Chr12 3278478 3282546 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00400 K01358 - gmx:100796744 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00400 12 3278478 3282546 Gma11g01091 11 9198858 9202395 GST