Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00396 ATGGCTCAGCCGCTCGTGAAGAAGGACGATGACCGCGACGACGAAGCTGAGTATTCTCCCTTTTTGGGAATTGAAAAGGGAGCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCACAACTAGATGCTAGGAGATGTTCACAGGTTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAGACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGGGATCTTGGGTTAAGGAGAATGGTCTACCTGATCATAAAGGAACTCTCCCCTTCTGCAGATGAGGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTACAGGGCTAATGCTATTCGTGTCCTTTGTCGTATCACGGATGGAACTCTCCTTACTCAAATAGAGCGATATCTGAAACAGGCTATTGTAGACAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGCGGCATTCATATACTCCAGACAAATCCCGAGATTGTAAAAAGATGGAGTAATGAGGTTCAGGAAGCTGTTCAATCAAGGGCAGCTCTTGTGCAATTTCATGCCCTGGCTTTGCTGCATCAGATACGGCAGAATGATCGACTCGCTGTTAGCAAGCTGGTTACCAGCTTAACCAGGGGAAATGTTCGCTCTCCTTTGGCTCAATGCCTTTTGGTCCGTTATACAAGTCAGGTAATTCGGGAGTCAGGAAATAATACACAATCAGGGGACCGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGTCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAGGGCAATTACAGAGCTCAATGGAGTAACTAGCCGAGAATTAACACCGGCAATTACTGTTCTTCAGCTTTTCTTAAGTTCATCTAAGCCAGTCTTGAGATTTGCCGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCCACACTTGCCATAACTACTCTATTGAAGACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAGATTACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCACTATGCTTGAAATTCCCTTTAAAATATAGATCTCTGATGAATTTCCTAAGTAACATTCTTAGGGAAGAAGGTGGCTTTGATTACAAGAAAGCAATTGTAGATTCAATTGTGATTCTTATTAGAGATATCCCTGATGCTAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCGACTGTTAGGGCCAGTGCTGTGAGCACATTGGCAAAGTTTGGTGCTGCTGTTGATGCACTAAAGCCCCGCATATTTGTACTGCTAAGGCGGTGTCTTTTTGATAGTGATGATGAGGTTCGTGACAGAGCAACACTTTATCTGAACACACTTGGAGGTGATGGTTCAGTTGTCGAGACAGATAAAGATGTGAAAGATTTCCTCTTTGGGTCATTTGTTATCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTACGAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAGTCTCAACCACTTGCAGAGAAGAAAGCCCCTGGTAAAAAGCCTACTGGTTTGGGTGCTCCTCCTAGTGGTCCCCCATCTACTGCAGATGCATATGAAAGGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAGTCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAATGTTGTTAAGCACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCACAAACACGATACCAGAGCAATTATTGGAAGATGTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTCTCAAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAAACATTTGTGGCTTTTGAGAAGCCTGAGGGATTGCCAATTGCTGGAAAATTTTCGAATGTTCTGAAATTTATTGTTAAAGAGGTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATACCAACTGGAGGATTTGGAGGTTGTCACAGCAGACTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAGTGCATGGGAAAGCATGGGCCCTGACTGTGAGCGAGTGGATGAATATGGTCTTGGCCCCAGGGAGAATTTGGCTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGGGAACCGAGGTAGTCCCACCCAATTCAAGGTCACACACATGCTTGTTGTCAGGTGTATTCATAGGAAATGTGAAGGTTCTTGTGCGGTTGTCTTTTGGACTTGATGGTCCAAAGGATGTTGCGATGAAACTTGCTGTCAGATCCGAGGATGAAACTGTTAGCGATACCATCCATGAGATTGTGGCTAGCGGCTAG 2664 0.4328 MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKTEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHILQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGNVRSPLAQCLLVRYTSQVIRESGNNTQSGDRPFYDYLESCLRHKSEMVIFEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTLAKFGAAVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGSFVIPLVNLETSLKNYEPSEEAFDIDSVPREVKSQPLAEKKAPGKKPTGLGAPPSGPPSTADAYERLLLSIPEFANFGKLFKSSEPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSEVFSKPLRSLPYDSPGQTFVAFEKPEGLPIAGKFSNVLKFIVKEVDPTTGETEDDGVEDEYQLEDLEVVTADYILKVGVSNFRSAWESMGPDCERVDEYGLGPRENLAEAVNTVINLLGMQPCEGTEVVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLAVRSEDETVSDTIHEIVASG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00396 887 SUPERFAMILY ARM repeat 29 561 IPR016024 -
Gma12g00396 887 Gene3D - 23 316 IPR011989 -
Gma12g00396 887 Gene3D - 769 885 IPR012295 -
Gma12g00396 887 PANTHER COATOMER SUBUNIT GAMMA 1 887 IPR017106 -
Gma12g00396 887 PIRSF Gamma-COP 7 885 IPR017106 -
Gma12g00396 887 Pfam Coatomer gamma subunit appendage platform subdomain 622 767 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Gma12g00396 887 SUPERFAMILY Clathrin adaptor appendage domain 617 771 IPR013041 -
Gma12g00396 887 Gene3D Coatomer, gamma subunit, appendage domain 617 768 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Gma12g00396 887 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 772 884 IPR009028 GO:0006886|GO:0016192|GO:0030117
Gma12g00396 887 Pfam Adaptin N terminal region 29 540 IPR002553 GO:0006886|GO:0016192|GO:0030117
Gma12g00396 887 MobiDBLite consensus disorder prediction 590 618 - -
Gma12g00396 887 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 770 884 IPR032154 -
Gma12g00396 887 PANTHER COATOMER SUBUNIT GAMMA 1 887 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00396 Gma-Chr12 3232570 3240585 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00396 K17267 - gmx:100789362 1706.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00396 12 3232570 3240585 Gma12g00396 12 3232570 3240585 ECH
Gma12g00396 12 3232570 3240585 Gma11g01083 11 9139181 9147463 GST