Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00352 ATGAACAATCCAACTCTTTTCTTATTGCTTGTTGCGTTCTCCCTCGTTTTCGCGGCCGTGTCGGCCTCTTCGGACGGCGGCAACGAGGAACCGCTGATCATGCAGGTGGTCGATGGCGGTGACGTCCGGCTGGGAGCAGAGCACCACTTTTTGGAGTTCAAGCGCAGGTTCGGGAAGGCGTACGATTCCGAGGACGAGCACGATTACAGGTACAAGGTGTTCAAGGCTAACATGCGCCGCGCCCGCCGCCACCAGAGTCTGGACCCTTCGGCGGCTCACGGCGTTACGCGCTTCTCCGATCTTACGCCGTCGGAGTTCCGGAACAAGGTGTTGGGTCTGAGAGGTGTGAGGTTGCCTTTGGACGCGAACAAGGCTCCCATTCTCCCCACTGATAATCTTCCGAGTGATTTTGATTGGAGAGATCACGGAGCAGTTACCCCTGTCAAGAATCAGGGTTCGTGCGGTTCGTGTTGGAGCTTCAGCACCACTGGGGCTCTCGAAGGTGCTCACTTTCTGTCTACAGGGGAACTTGTCAGTCTTAGCGAGCAGCAGCTTGTTGATTGTGATCACGAGTGTGATCCAGAAGAACCAGGATCTTGCGACTCCGGATGCAATGGTGGATTGATGAATAGTGCTTTTGAGTACATCCTTAAATCTGGTGGGGTCATGCGCGAGGAAGACTACCCTTATTCTGGTGCTGATAGCGGAACCTGCAAATTCGACAAAACGAAAATTGCAGCATCAGTGGCAAACTTCAGTGTCGTCTCACTAGATGAAGACCAGATTGCTGCCAATCTTGTGAAAAATGGCCCTCTTGCAGTGGCCATCAATGCAGCATATATGCAGACATATATCGGTGGAGTATCATGCCCATACGTATGTTCAAGAAGGCTTAATCATGGGGTCTTATTGGTGGGATATGGTTCTGGTGCCTATGCACCCATTCGTATGAAGGAGAAGCCATTTTGGATCATTAAGAACTCCTGGGGAGAGAACTGGGGAGAAAATGGATACTACAAGATTTGCCGGGGACGAAATATCTGTGGGGTGGACTCCATGGTTTCAACTGTGGCTTCTGTTCATACAACTACTCAGTAG 1098 0.5137 MNNPTLFLLLVAFSLVFAAVSASSDGGNEEPLIMQVVDGGDVRLGAEHHFLEFKRRFGKAYDSEDEHDYRYKVFKANMRRARRHQSLDPSAAHGVTRFSDLTPSEFRNKVLGLRGVRLPLDANKAPILPTDNLPSDFDWRDHGAVTPVKNQGSCGSCWSFSTTGALEGAHFLSTGELVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYILKSGGVMREEDYPYSGADSGTCKFDKTKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAAYMQTYIGGVSCPYVCSRRLNHGVLLVGYGSGAYAPIRMKEKPFWIIKNSWGENWGENGYYKICRGRNICGVDSMVSTVASVHTTTQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00352 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
Gma12g00352 365 PANTHER CYSTEINE PROTEASE RD19C-RELATED 36 359 - -
Gma12g00352 365 PRINTS Papain cysteine protease (C1) family signature 151 166 IPR000668 GO:0006508|GO:0008234
Gma12g00352 365 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Gma12g00352 365 PRINTS Papain cysteine protease (C1) family signature 322 328 IPR000668 GO:0006508|GO:0008234
Gma12g00352 365 Pfam Papain family cysteine protease 133 356 IPR000668 GO:0006508|GO:0008234
Gma12g00352 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 151 162 IPR000169 -
Gma12g00352 365 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 36 359 - -
Gma12g00352 365 CDD Peptidase_C1A 134 357 IPR039417 -
Gma12g00352 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 322 341 IPR025661 -
Gma12g00352 365 SMART Inhibitor_I29_2 50 106 IPR013201 -
Gma12g00352 365 Pfam Cathepsin propeptide inhibitor domain (I29) 50 106 IPR013201 -
Gma12g00352 365 Gene3D Cysteine proteinases 32 358 - -
Gma12g00352 365 SUPERFAMILY Cysteine proteinases 48 358 IPR038765 -
Gma12g00352 365 SMART pept_c1 133 358 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00352 Gma-Chr12 2908926 2911721 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00352 K01373 - gmx:100812198 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00352 12 2908926 2911721 Gma12g00352 12 2908926 2911721 ECH
Gma11g01039 11 8812623 8814682 Gma12g00352 12 2908926 2911721 ECH
Gma12g00352 12 2908926 2911721 Gma11g01039 11 8812623 8814682 GST