Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00338 ATGGGAAGTTTGGGAGCGATTCTGaaacatccagatgacttttaccctctgctgaagctgaaaatggcggcgaggaacgccgagaagcagatcccgccggagccgcactgggcgttctGCTACACAATGCTCCACAAGGTTTCTCGAAGTTTCGCCCTCGTCATTCAGCAACTCGGCATCGAGCTTCGCAACGCCGTTTGCATATTTTATTTGGTTCTGCGAGCTCTCGACACCGTTGAGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGAACTACCAGGAAGCAATTGAGGACATTACCAAAAGAATGGGTGCTGGAATGGCCAAATTTATTTGCAAGGAGGTAGAAACAATTGATGACTATGATGAATATTGTCACTATGTGGCAGGACTTGTTGGGCTGGGTTTATCAAAGCTTTTCCATGCATCTGGTTCAGAAGATCTGGCTCCAGATGACCTTTCCAATTCAATGGGCTTGTTTCTACAGAAAACAAACATTATTCGAGATTATCTGGAAGACATCAATGAGATCCCCAAGTCACGCATGTTTTGGCCACGACAGATTTGGAGTGAATATGTTAACAAACTTGAGGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGACATGGTCACTAATGCTCTGATGCATGCTGAAGATTGCTTAAAATACATGGCTGCTTTACGTGACCCGCCTATATTTCGCTTTTGTGCTATACCCCAGATAATGGCAATTGGAACACTTGCATTATGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGAGGTTTAACTGCCAAAGTGATTGACCGAACAAAGACTATGGCTGATGTCTACGGTGCTTTTTTTGATTTTGCTTCTATGTTGGAGCCCAAGGTTGACAAAAACGATCCCAATGCAACAAAAACATTGAGCAGGCTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTCTTAAGTAAAAGCAGGAAATCTTACATTGTGAATGATGAAAGTGGATATGGCTCAACCATGATTGTCATATTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCTAACCACCATAATAGCTAG 1245 0.3823 MGSLGAILKHPDDFYPLLKLKMAARNAEKQIPPEPHWAFCYTMLHKVSRSFALVIQQLGIELRNAVCIFYLVLRALDTVEDDTSIETDVKVPILIAFHRHIYDRDWHFSCGTKEYKVLMDQFHHVSTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGSEDLAPDDLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSEYVNKLEDLKYEENSVKAVQCLNDMVTNALMHAEDCLKYMAALRDPPIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFASMLEPKVDKNDPNATKTLSRLEAIQKTCRESGLLSKSRKSYIVNDESGYGSTMIVILVIMVSIIFAYLSANHHNS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00338 414 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Gma12g00338 414 SFLD Isoprenoid Synthase Type I 36 325 - -
Gma12g00338 414 PANTHER SQUALENE SYNTHASE-LIKE ISOFORM X1 1 411 - -
Gma12g00338 414 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 36 367 IPR006449 GO:0004310|GO:0008610
Gma12g00338 414 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Gma12g00338 414 SFLD Squalene/Phytoene Synthase Like 36 325 IPR002060 GO:0009058
Gma12g00338 414 Gene3D Farnesyl Diphosphate Synthase 34 371 IPR008949 -
Gma12g00338 414 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 411 IPR044844 GO:0004311
Gma12g00338 414 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Gma12g00338 414 SUPERFAMILY Terpenoid synthases 36 367 IPR008949 -
Gma12g00338 414 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00338 Gma-Chr12 2795041 2801149 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00338 K00801 - gmx:547940 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00338 12 2795041 2801149 Gma12g00338 12 2795041 2801149 ECH
Gma12g00338 12 2795041 2801149 Gma11g01023 11 8666811 8674002 GST