Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00317 ATGGAAGTTAACCTCTCTCTCAACCACCACCGCTCCCTCACTCTAACCTCCCCCACTCCCTCCCTCTCCACTCTCCGCACACACTTCCTCGGTTCCACCCACACTCTCCGCCCTCCTCCTCCGACTCCACCTTCTCTTCGCTCCAGGAACAAACGCAGCAGCAGCAACTTTGGTCTTCTTCGCTTCCACTCCCCTCGCTTCGTCTTCAAGGCCTCCTTCCATTCCCACTCCGTTATCGTCGTCTTCATCGTCGTCACTCTCTCTGCCGTTTCCTGGCTCCACTTCACTCTCAACAAGAAGAAGAACAAGACTCTTAACCAGAGACGGGGACATGCAAAATTTGCGTTGTCATCGCAAGGAACTAATGTTGGGAACCGGGTCATTGATAGGGAGATTCTTGGTTTTACGGAATTTCAAAGGGATAACACTCTTACTGAGATTGGGAAGTTGAAGGATCACCATGGAGAGGACTACCGTGTCTTTGAGGAAAACGAGATCCACATTCCGTTTTTGAAATCTTCAGTGGTGCAAGAAGTGGTCGCTGCGACCGAGGCTTCGGAGTCATCTTCTTCTGTTCTTGACTCTGGTGTCAATAATAATAATGGTTCCAAGGTATTGGATGAAGCTTTTTTATCTGTGGCTTTCTCACCAAGTTCTTTACAGCCGTTAGAGTTTGCTGAGGAAATGGCTATACAAGTGGAAGAAAGTCAAGATAAAGTTGACTCTGATGATGAGTTGCCTCTGAATATGGTTGAACCTGAACATTCTGCATCTTCTGTTTCTGTAAACAATGCACTGACAACAGTCGATGGACATACTAAAGAAAAAATTGAACTTGGTGCTGTCAACGATGATGTCCTTTTCGGTGAACCAGTTAGGGAAGGGCTGTACATGTTTTATGAGGTTAACAAGCCTGCGACTGGATCCATGACACCACTCAGTAGTTTAAAGTCATTATCTCCCCGTGCTTCTTTTAGGAATAAAAAAGGATTGCCCTCAGTGATGGGAAATGGTGCACTAAAGGGATCAGGGTTATCTACAGATATTCCTCTACAAAGTGCAGAACATGTCAAAGGAGCAGTTAAAATTTCCAGTCATAAAGGAGGCTACCCTCCACAACATGTGAGTAAAAACTTGAGGAAAGGTGTCATCTCTTTAAGAGAAAGGGAAAGTATGGATCACAATGGTAACAAAGTTTTTCCCCTGAATGCTCACGCGACCAAGGTGCATGTTGATCAAACAAATGGTCAATTCAGGGTGCATGATGGTCATAAAATGGATTCTTCAGAGCTTCTAAGCAAATATAATAATTTGCTAAAAGTTGAGAGGTTACATGAATGTGTAGAATTGCTTAAAGATATGGAAACAAAGGGTTTATTAGACATGAGTAAGGTTTATCATGCCAAGTTTTTTAACATCTGCAAGAAACGAAAGGCTGTCAAAGAAGCTTTTGATTTCATTAGACTAATTCCAAATCCAATGCTGAGTACATTTAATATGCTTATGTCGGTGTGTGCAAGCTCCCAAGATTCAGAAGGGGCTTTCCAAGTTTTGCAGCTTCTTAAGGATGCTCGACTAGAACCTGATTGCAAACTTTATACCACTCTGATATTAACTTGTGCAAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAACGTTCATACCTATGGAGCACTTATTGGTGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGAATTATGAGGTCAAAGAATGTGAAGCCAGACCGTGTTGTATTCAATGCACTTATAGCTGCCTGTGCTCAATCAGGAGCAGTAGATCGTGCTTTTGATGTGTTAGCAGAAATGGCAGCTGAAACACAGCCCATTGACCCAGATCACGTAACAATAGGAGCATTGTTGAAAGCATGCACAAAAGCTGGTCAGGTTGAACGAGCTCAAGAAGTGTACAAGATGGTACAAAAATATAACATAAAGGGTTGTCCAGAAGTTTACACCATTGCCATTAATTCTTGCAGCCAAACTGGAGATTGGGAATATGCTCGTACTGTATACAATGACATGACCCAGAAAGGGATCCTCCCAGATGAGATATTTCTGAGTGCACTAATAGATGTTGCTGGTCATGCTAAAAAGCTGGATGCTGCCTTTGATGTCCTGCAAGAAGCCCATAAAGGAGGAATACAGATTGGAATAATGTCATATAGCTCATTGATGGGTGCCTGTAGCAATGCAAGAAATTGGCAGAAAGCATTGGAGTTATATGAATATCTTAAATCTCTTAAATTGACGATAACAGTTTCAACAGTTAATGCTTTGCTCACTGCACTTTGTGATGGAGATCAATTTCAGAAGGCTTTGGAGGTTTTATTTGAAATGAAAGGATTAGGATTGAGCCCAAACAGTATCACATTCTCAATACTTATAGTGGCAAGTGAGAAAAAGGATGATATGGAGGCAGCTCAGATGATCCTTTCTCTAGCTAAAAAAGATGGTGTAGCCCCTAATCTCATCATGTGTCGATGCATAATTGGAATGTGCCAGCGGAGATATGAGAAGGCTTGCTTTGTTGGTGAGCCTGTTTTATCTTTTGATTCAGGACGGCCACTAGTTGATAATAAATGGACATCACTGGCCTTAATGGTGTATCGTGAAACAATTGAAGCCGGTGGAAAACCTACAAGTGAAATATTACCACAAATTCTGGGATGCCTGCAACTCCCTTATGATACATCTGTGAAAAATAGACTTGTTGAGAACCTAGGAGTACGTGCAGAAACTTCAAGAAGCTCAAACCTCTGTTCATTAATGGATGGATTTGGTGAATATGATCCTCGTGCTTTTTCAATACTTGAGGAATCTGCTTCACATGGAGTTGTTCCATCTGTATCATTTAAAGTGAGTCCTATTGTTATTGATGCTAAAGAATTGCATGCTTCTACTGCTGAGGTATACATCATAACAGTTTTGAAAGGTCTCAAGTATCGACTAGCAGCAGGTGCAAGATTACCCAATATAATCATTTTATTGCCTGTAGAGGAAACAGAAGTTGTGTCTCCCAAGGGGAAGAAGATTATTAACCTTGGAGGAAGAGCTGGCCAAGCAGTTGGAGCGTTATTGAGGAGGCTTCAGATTCCTCACCAAGGTAGTGAATCGAATGGAAAGCTTAGAATTGGTGGTTTGGCTCTGAAAAAATGGTTTCAGCCGAAACTTGCATCTCCGTTCAGTGTTAATATGGGATCTCCAACATTCAGTGGAAAACCAGGTGATTGGAACTCGTCCCTATCACGACTGGGCAAAAATATTAGTAATCAGCAACGAAACATCCGAATTGGCAATCTGTCTTTGGATTAA 3384 0.4199 MEVNLSLNHHRSLTLTSPTPSLSTLRTHFLGSTHTLRPPPPTPPSLRSRNKRSSSNFGLLRFHSPRFVFKASFHSHSVIVVFIVVTLSAVSWLHFTLNKKKNKTLNQRRGHAKFALSSQGTNVGNRVIDREILGFTEFQRDNTLTEIGKLKDHHGEDYRVFEENEIHIPFLKSSVVQEVVAATEASESSSSVLDSGVNNNNGSKVLDEAFLSVAFSPSSLQPLEFAEEMAIQVEESQDKVDSDDELPLNMVEPEHSASSVSVNNALTTVDGHTKEKIELGAVNDDVLFGEPVREGLYMFYEVNKPATGSMTPLSSLKSLSPRASFRNKKGLPSVMGNGALKGSGLSTDIPLQSAEHVKGAVKISSHKGGYPPQHVSKNLRKGVISLRERESMDHNGNKVFPLNAHATKVHVDQTNGQFRVHDGHKMDSSELLSKYNNLLKVERLHECVELLKDMETKGLLDMSKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLMSVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIAINSCSQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGIQIGIMSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFEMKGLGLSPNSITFSILIVASEKKDDMEAAQMILSLAKKDGVAPNLIMCRCIIGMCQRRYEKACFVGEPVLSFDSGRPLVDNKWTSLALMVYRETIEAGGKPTSEILPQILGCLQLPYDTSVKNRLVENLGVRAETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSFKVSPIVIDAKELHASTAEVYIITVLKGLKYRLAAGARLPNIIILLPVEETEVVSPKGKKIINLGGRAGQAVGALLRRLQIPHQGSESNGKLRIGGLALKKWFQPKLASPFSVNMGSPTFSGKPGDWNSSLSRLGKNISNQQRNIRIGNLSLD 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00317 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Gma12g00317 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 705 IPR002885 -
Gma12g00317 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Gma12g00317 1127 MobiDBLite consensus disorder prediction 31 52 - -
Gma12g00317 1127 Pfam Pentatricopeptide repeat domain 799 857 IPR002885 -
Gma12g00317 1127 Gene3D Tetratricopeptide repeat domain 718 914 IPR011990 GO:0005515
Gma12g00317 1127 Gene3D Tetratricopeptide repeat domain 430 629 IPR011990 GO:0005515
Gma12g00317 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
Gma12g00317 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 776 810 IPR002885 -
Gma12g00317 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
Gma12g00317 1127 Pfam Pentacotripeptide-repeat region of PRORP 497 630 IPR033443 -
Gma12g00317 1127 Pfam Pentacotripeptide-repeat region of PRORP 644 786 IPR033443 -
Gma12g00317 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 599 633 IPR002885 -
Gma12g00317 1127 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 71 1127 - -
Gma12g00317 1127 Gene3D Tetratricopeptide repeat domain 630 699 IPR011990 GO:0005515
Gma12g00317 1127 TIGRFAM PPR: pentatricopeptide repeat domain 532 565 IPR002885 -
Gma12g00317 1127 TIGRFAM PPR: pentatricopeptide repeat domain 674 707 IPR002885 -
Gma12g00317 1127 TIGRFAM PPR: pentatricopeptide repeat domain 566 599 IPR002885 -
Gma12g00317 1127 TIGRFAM PPR: pentatricopeptide repeat domain 497 530 IPR002885 -
Gma12g00317 1127 TIGRFAM PPR: pentatricopeptide repeat domain 744 773 IPR002885 -
Gma12g00317 1127 TIGRFAM PPR: pentatricopeptide repeat domain 779 811 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00317 Gma-Chr12 2561805 2572533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00317 506 977 Glycosyltransferase AT1G05670 21.324 2.47e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00317 - - gmx:100814164 2122.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00317 12 2561805 2572533 Gma12g00317 12 2561805 2572533 ECH