Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00305 ATGGGTTTCTTTGGTACCATTTTGGGGTTTTTGGGATTTGGGGTTGGGATTTCGATTGGTCTCGTGTCTGGGTACTTTCTCTTCATCTACTTCCAACCCACCAATGTTGAGGATCCTGAAATCAAGCCATTGTCGGAGCAAGAGCAAGAGACTCTGCAACGAATGTTTCCAGAGATTCCTCTTTGGATAAAAAATCCGGATTTTGATCGGCTTGATTGGCTGAACAAGTTTGTAGAATATATGTGGCCGTATCTTGATAAGGCAATTTGTAAGACTGCGAAAAACATTGCAAAACCCATAATTGCCGAACAGATTCCTAAATACAAAATTGATTCTGTTGAGTTTGAAACACTCACATTGGGGTCGCTGCCACCAACATTTCAAGGGATGAAAGTTTTTGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTCACTGTTTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTGGATTTACAAGTTTTCCTCTTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCGTGCTTTGCCAACATATACGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCGGGAGTCTACAGGATTGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACATGTATCTATGGCCCAAAACCTTGGAAGTTCAAGTGTTAGATATGTCAAAAGCCTTGAAGAGGCCTGTTGGAATTTTACATGTAAAGGTTCTGCAAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAGCTTACTGAGGATAAATTGCCATCAAAAAAGACTACTGTGAAGCACAATAACTTAAATCCTGAATGGAATGAAGAATTCAATATAGTTGTTAAAGATCCAGACTCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCGTGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAATATGGATCCTAATGATGCCCAAAATGAGAAGTCACGAGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAGGAGGATTTGGGCAAGGGGTTTGAAGAGACACAGACAGTACCAAAAGCTCCTGAAGGTACTCCAGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGACGTTGAAGGAAAGTATCACACTAATCCACATGTACGCCTTATTTTCAGAGGGGATGAGAAAAAAACCAAGCGCATTAAAAAGAACAGAGATCCAAGATGGGAAGATGAGTTCCAGTTTATGGTGGACGAGCCTCCCACCAATGATAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCACCAAAAGGAATCATTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCCTCCAGATAGAGTTGCAGTGGAGAACCTCGGAAGCATGA 1620 0.416 MGFFGTILGFLGFGVGISIGLVSGYFLFIYFQPTNVEDPEIKPLSEQEQETLQRMFPEIPLWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVFVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLWPKTLEVQVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHNNLNPEWNEEFNIVVKDPDSQVLEINVYDWEQVGKRDKMGMNVIPLKEVSPEEPKRFTLDLLKNMDPNDAQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGDEKKTKRIKKNRDPRWEDEFQFMVDEPPTNDRLHVEVVSTSSRNLLHQKESLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRTSEA 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00305 539 Gene3D C2 domain 256 409 IPR035892 -
Gma12g00305 539 CDD C2 262 364 - -
Gma12g00305 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 536 IPR045050 GO:0008289
Gma12g00305 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Gma12g00305 539 SMART C2_3c 419 517 IPR000008 -
Gma12g00305 539 SMART C2_3c 261 361 IPR000008 -
Gma12g00305 539 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 536 - -
Gma12g00305 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Gma12g00305 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Gma12g00305 539 Pfam C2 domain 260 359 IPR000008 -
Gma12g00305 539 Pfam C2 domain 419 520 IPR000008 -
Gma12g00305 539 ProSiteProfiles C2 domain profile. 399 518 IPR000008 -
Gma12g00305 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 393 IPR035892 -
Gma12g00305 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Gma12g00305 539 PRINTS C2 domain signature 277 289 IPR000008 -
Gma12g00305 539 PRINTS C2 domain signature 304 317 IPR000008 -
Gma12g00305 539 PRINTS C2 domain signature 326 334 IPR000008 -
Gma12g00305 539 Gene3D C2 domain 419 537 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00305 Gma-Chr12 2455499 2466777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00305 255 516 Lipid Metabolism Gene Families AT3G61300 27.206 1.86e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00305 - - gmx:100781189 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00305 12 2455499 2466777 Gma12g00305 12 2455499 2466777 ECH
Gma12g00305 12 2455499 2466777 Gma11g00978 11 8302967 8310178 GST