Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00280 ATGATAGATTCAAATCCACCACTCATGCAACACTATGGGGCACTTGTGAGAAACTCTGGTGAAGCCAAAGAGGCTACAAGTTTTAATGATCAAAACCATCCTTTAGTGGATGCATGTGACCTACCCTTGATAGACCTTAGTGGTCTTAAAAGTTCTAATGAAAGAGAAAGGAGGGCTTGCACTGCAGCAATATGCAAGGCAGCATCAGAATGGGGATTTTTTCAAGTGGTGAACCATGGGATAAGGCATGACTTGCTAAGAAAAATGAGGGAGGAACAAGTGAAGTTGTTTGAAGTACCGTTTGAGAAGAAGGTCACTTGCGGGGTTCTAAATAACCCATATAGGTGGGGGACACCAACAGCTACTCGTTCAAATCAATTCTCATGGTCTGAAGCTTTCCACATTCCTCTCACCATGATCTCAGAAGCTGCTTCCTGGGGTGAATTCACTTCTTTGAGGGAAGCAATAAATGAGTTTGCACCTGCGATGCTAGAAGTATCTAGGTTGTTGGCCAGCATTCTAGCACAAAACCTGGGCTACCCAGAGGATGCACTTGAAAAACTTTGTGATGCTGGTGCATGCTTTCTGAGATTAAATCACTATCCATGCTGCCCAAAATCTAAAGATGAAATTTTTGGATTAGTGCCTCACACTGACAGCGATTTCCTTACAATCCTTTATCAAGATCAAGTCGGTGGACTCCAACTCATGAAAGATTCCAAATGGGTCGCTGTAAAACCAAACCCAGATGCTCTAATTGTTAACATTGGGGACCTTTTCCAGGCTTGGAGTAATGACGAGTACAAAAGCGTGGAGCACAAGGTTGTGGCAAATAACAAAATGGAAAGATACTCCATAGCATATTTCCTATGTCCTTCTTACAGTACTGTCATAAACGGCTGCAAAGGACCTTCTGTTTATAGGAAGTTCACGTTTGGAGAATACAGACACCAAATTCAAGAAGATGTCAAGAAAATAGGACACAAAATTGGACTATCAAGATTTCTACTTTAA 1014 0.4181 MIDSNPPLMQHYGALVRNSGEAKEATSFNDQNHPLVDACDLPLIDLSGLKSSNERERRACTAAICKAASEWGFFQVVNHGIRHDLLRKMREEQVKLFEVPFEKKVTCGVLNNPYRWGTPTATRSNQFSWSEAFHIPLTMISEAASWGEFTSLREAINEFAPAMLEVSRLLASILAQNLGYPEDALEKLCDAGACFLRLNHYPCCPKSKDEIFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVKPNPDALIVNIGDLFQAWSNDEYKSVEHKVVANNKMERYSIAYFLCPSYSTVINGCKGPSVYRKFTFGEYRHQIQEDVKKIGHKIGLSRFLL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00280 337 Gene3D - 14 325 IPR027443 -
Gma12g00280 337 Pfam 2OG-Fe(II) oxygenase superfamily 195 292 IPR044861 -
Gma12g00280 337 Pfam non-haem dioxygenase in morphine synthesis N-terminal 41 135 IPR026992 -
Gma12g00280 337 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 22 329 - -
Gma12g00280 337 PANTHER OS02G0630300 PROTEIN 22 329 - -
Gma12g00280 337 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 190 292 IPR005123 -
Gma12g00280 337 SUPERFAMILY Clavaminate synthase-like 35 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00280 Gma-Chr12 2238077 2241085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00280 36 315 Glycosyltransferase AT5G59530 31.313 8.41e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00280 - - gmx:100809329 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00280 12 2238077 2241085 Gma11g00955 11 8078318 8081845 GST