LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g00244	ATGGAGATAAGTTTGGGGAAACTTGCATTTGACATTGATTTTCATCCCTCAGATAATCTTGTTGCCGCCGGTCTAATTACCGGCCACCTTCACCTATACCGTTATAGCCCTCATACTGTCCCTGTGAGGCTGTTGGAAGTTCATGCTCACACTGAGTCTTGCAGGGCTGCTCGATTCATCAACGGTGGACGTGCACTCTTAACGGGTTCTCCGGATTGCTCAATACTGGCTATAGATGTGGAAACTGGTTCTACAATTGCCCGGGTTGATAATGCTCACGAATCTGCGGTCAATAGATTGATAAACCTGACTGAGTCAACTGTTGCCTCAGGAGATGATGATGGTTGTATAAAGGTATGGGATACCAGAGAACGCTCTTGTTGCAATTCTTTTAATGTCCATGAAGATTACATTTCAGACATTACTTTTGCATCTGATGCAATGAAACTGTTGGCAACAAGTGGAGATGGGACTCTGTCTGTTTGCAATCTTCGAAGAAATACAGTGCAAGCTCGATCAGAATTTTCGGAAGATGAGTTGCTGTCTGTTGTTTTAATGAAGAATGGTAGGAAAGTTGTATGCGGATCACAAACTGGAATCATTCTATTGTATTCATGGGGATGCTTCAAGGATTGTAGTGATCGATTTACTGATCTTTCTTCGAACTCTATTGATGCAATGTTGAAGCTTGATGAAGATAGGATTATTACTGGATCAGAGAATGGGATTATCAACCTGGTTGGGATATTACCTAACAGAGTCATCCAGCCAATAGCAGAACACTCAGAGTATCCTGTTGAGTGTCTTGCATTTTCTCATGATAGGAAGTTCCTTGGAAGCATTGCTCATGATCAAATGTTGAAGCTATGGGACTTGGATAATATACTGCCAGGTTCAAGAAACACACAAACAAATGAAAGTGGAGTGATTGATAGTGACGATGATGAGATGGATGTTGATGGGAACAAGAGAAAGAATGGGCATGCTGTAGGTGGTTCGAACAACTTCTTTGCAGATTTATAG	1023	0.4174	MEISLGKLAFDIDFHPSDNLVAAGLITGHLHLYRYSPHTVPVRLLEVHAHTESCRAARFINGGRALLTGSPDCSILAIDVETGSTIARVDNAHESAVNRLINLTESTVASGDDDGCIKVWDTRERSCCNSFNVHEDYISDITFASDAMKLLATSGDGTLSVCNLRRNTVQARSEFSEDELLSVVLMKNGRKVVCGSQTGIILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRIITGSENGIINLVGILPNRVIQPIAEHSEYPVECLAFSHDRKFLGSIAHDQMLKLWDLDNILPGSRNTQTNESGVIDSDDDEMDVDGNKRKNGHAVGGSNNFFADL	340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g00244	340	SMART	WD40_4	38	79	IPR001680	GO:0005515
	Gma12g00244	340	SMART	WD40_4	251	291	IPR001680	GO:0005515
	Gma12g00244	340	SMART	WD40_4	168	205	IPR001680	GO:0005515
	Gma12g00244	340	SMART	WD40_4	1	34	IPR001680	GO:0005515
	Gma12g00244	340	SMART	WD40_4	124	163	IPR001680	GO:0005515
	Gma12g00244	340	SMART	WD40_4	82	121	IPR001680	GO:0005515
	Gma12g00244	340	ProSiteProfiles	Trp-Asp (WD) repeats profile.	90	130	IPR001680	GO:0005515
	Gma12g00244	340	PANTHER	WD REPEAT-CONTAINING PROTEIN 55	9	314	-	-
	Gma12g00244	340	MobiDBLite	consensus disorder prediction	301	327	-	-
	Gma12g00244	340	Gene3D	-	6	214	IPR015943	GO:0005515
	Gma12g00244	340	SUPERFAMILY	WD40 repeat-like	10	294	IPR036322	GO:0005515
	Gma12g00244	340	ProSitePatterns	Trp-Asp (WD) repeats signature.	278	292	IPR019775	-
	Gma12g00244	340	ProSitePatterns	Trp-Asp (WD) repeats signature.	108	122	IPR019775	-
	Gma12g00244	340	PANTHER	WD REPEAT-CONTAINING PROTEIN 55	9	314	-	-
	Gma12g00244	340	ProSiteProfiles	Trp-Asp (WD) repeats profile.	259	294	IPR001680	GO:0005515
	Gma12g00244	340	Pfam	WD domain, G-beta repeat	260	291	IPR001680	GO:0005515
	Gma12g00244	340	Pfam	WD domain, G-beta repeat	92	121	IPR001680	GO:0005515
	Gma12g00244	340	Gene3D	-	215	337	IPR015943	GO:0005515
	Gma12g00244	340	PIRSF	WD_rpt_55	1	340	IPR017422	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g00244	Gma-Chr12	1890987	1897212	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g00244	K24750		-	gmx:100777451	677.552

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma12g00244	12	1890987	1897212	Gma11g00920	11	7699715	7705120	GST