Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma12g00243 | ATGGAGGGAaccgcaacagggtgttacaagtgcggcagacctggtcactggtcacgggattgcCCTTTCTCCGCTCCCAATTCCAATcctaaccctaaccctaaccctaaccctaacccCGCCACCACTCCCAATCCAAATACTCCAAATCCTTCTTCCTCTTCTTTCAAGCCCAGATTCGCCGCCGAAAAGCCCAAGAAACTCCCCCGAACAAAGCCCAAGCTCACACCGGAGCTTCTTCTCTCCGACGAGGGTCTCGGTTACGTCCTCCGCTACTTCCCTCGCGAGTTCAAATACCGTGGTGGTGGCCACGAGGTTCGCGATTTGGGTAACCTGCTTCGTCTGTACACCGAATGGCACTCTCGCTTGCTCCCTTATTACTCTTTCAATCAGTTTGTTCACAAAGTGGAGAAAGTTGCTGCTACAAGGCGTGTAAAGACTTGCCTTAGAGAATTGAGAGAAAGAGTTGCAAGTGGTGGAGATCCAACAAAACTGCGTGAACCACCTGTTGTGCATGACATTCCATCTGATGAGCACGGATATGTTGTATCTGCAGAAGATGGGGGAGCAACTCATCAAGAGACAGATGTGTTTGCAGAATCCGAAAATGTTAATGACATTCAAGAAGACATGCTTAATGATATATATGATAAAGCTACTGAAGAACATGCTCAGTCCATGCACAATGTTATTGGTACTAACAAGGCTTCAGAAAGTAGCGCAGCTGAAAAGACATCAGAGGAAGTTCAATATAATGGATCCAGCCAGTCTGGCAAagctgagataacagaagagcagagggctcgtatggaagcaaataggttgaaggcactagaaaggcgagctgagataacagaagagcagagagctcgtatggaagccaataggttaaaggcactagaaaggcgtgctgCCTTATCACAAGCCTCCTAA | 933 | 0.3569 | MEGTATGCYKCGRPGHWSRDCPFSAPNSNPNPNPNPNPNPATTPNPNTPNPSSSSFKPRFAAEKPKKLPRTKPKLTPELLLSDEGLGYVLRYFPREFKYRGGGHEVRDLGNLLRLYTEWHSRLLPYYSFNQFVHKVEKVAATRRVKTCLRELRERVASGGDPTKLREPPVVHDIPSDEHGYVVSAEDGGATHQETDVFAESENVNDIQEDMLNDIYDKATEEHAQSMHNVIGTNKASESSAAEKTSEEVQYNGSSQSGKAEITEEQRARMEANRLKALERRAEITEEQRARMEANRLKALERRAALSQAS | 310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma12g00243 | 310 | Pfam | Zinc knuckle | 7 | 22 | IPR001878 | GO:0003676|GO:0008270 | |
| Gma12g00243 | 310 | MobiDBLite | consensus disorder prediction | 234 | 268 | - | - | |
| Gma12g00243 | 310 | PANTHER | TIMELESS-INTERACTING PROTEIN | 4 | 283 | - | - | |
| Gma12g00243 | 310 | MobiDBLite | consensus disorder prediction | 27 | 47 | - | - | |
| Gma12g00243 | 310 | Pfam | Replication Fork Protection Component Swi3 | 74 | 155 | IPR012923 | GO:0005634|GO:0006974|GO:0048478 | |
| Gma12g00243 | 310 | ProSiteProfiles | Zinc finger CCHC-type profile. | 8 | 22 | IPR001878 | GO:0003676|GO:0008270 | |
| Gma12g00243 | 310 | SUPERFAMILY | Retrovirus zinc finger-like domains | 6 | 24 | IPR036875 | GO:0003676|GO:0008270 | |
| Gma12g00243 | 310 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
| Gma12g00243 | 310 | Gene3D | - | 4 | 47 | - | - | |
| Gma12g00243 | 310 | PANTHER | TIMELESS INTERACTING-RELATED | 4 | 283 | IPR040038 | GO:0000076 | |
| Gma12g00243 | 310 | SMART | c2hcfinal6 | 7 | 23 | IPR001878 | GO:0003676|GO:0008270 | |
| Gma12g00243 | 310 | MobiDBLite | consensus disorder prediction | 234 | 261 | - | - | |
| Gma12g00243 | 310 | Coils | Coil | 260 | 302 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma12g00243 | Gma-Chr12 | 1885191 | 1888439 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma12g00243 | K10904 | - | gmx:100799216 | 523.857 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma12g00243 | 12 | 1885191 | 1888439 | Gma11g00919 | 11 | 7695608 | 7698891 | GST |