Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00171 ATGACAGAGAATCTGAAAGCGCCGAAGCTTCCCGTCGAAGGAAAGCGCAACATTCTCATCACCAGTGCCTTGCCTTACGTCAACAATGTTCCTCACCTCGGCAACATCATTGGATGCGTGTTGAGTGCTGATGTGTTCGCTCGCTACTGTCGGCTTCGCGGTTATAACGCTATTTACATCTGCGGTACTGATGAGTATGGAACCGCCACTGAGACTAAAGCCATGGAAGAAAACTGCTCTCCCAAAGAGATTTGTGACAAATACCATGCTATTCATAAGGAGGTCTACAATTGGTTCAATATAAGTTTTGATGAATTTGGGCGGACGTCATCCCCTGAGCAAACTGAAGTTTGCCAAGCAATTTTCAAAAAGATATTCGAAAACAAGTGGCTATCCGAGAACACAATGCAGCAGCTTTACTGCAACACCTGTGAAAGGTTCTTGGCTGATAGGCTTGTGGAGGGAACCTGCCCGACTCCTGGCTGCGAGTATGATTCTGCCCGAGGAGACCAGTGTGAGAAGTGTGGAAAGCTTCTAAATCCAACAGAATTGAAAAATCCCGGATGCAAGGTTTGTCAGAAAACTCCTCGTATTCGTGATACAGATCACTTGTTTCTTGAACTCCCCCTATTGAAAGATAGATTGGAAAAATACATCAGTGAGATGTCTGTGGTTGGTGGATGGAGTCAAAATGCTATCCAAACAACAAATTCATGGCTTAGAGAAGGGTTAAAGCCACGCTGTATTACAAGGGATCTAAAGTGGGGGGTTCCGGTTCCACATGAAAAATACAGTGACAAGGTTTTCTATGTATGGTTTGATGCACCTATTGGATATGTCTCAATCACTTCGTGCTACACACGTGATTGGGAGAAATGGTGGAAAAACCCAGAGAATGTGGAGCTGTATCAGTTTATGGGCAAGGACAATGTGCCATTCCATACTGTGATGTTTCCATCTACTCTACTTGGAACTAGTGAAAATTGGACTTTAATGAAGACTATTAGTGTTACTGAATACTTGAATTATGAAGCAGGGAAGTTTTCTAAGAGCAAAGGTATCGGAGTTtttggtaatgatgcgaaagatactaatattccagttgaagtatggagatattacttgctcactaataggccggaggtatcagatacgttatttacgtggtcggacttgcaagctaaattaaatagtgAGTTATTGAATAATTTGGGCAACTTTATCAACCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGGCAAGGATATGATTCCATTATCCCCTCTGTTCCTGATGATGTAAGTGGTGACTCCCATGGTCCGACCAAAAAATTGGCTGATAAAGTTGCTGCATATATAGACCAATACATAGAAGCAATGGAGAAGGTTAAACTAAAGCAAGGGTTGAAAGTCGCAATGAGCATATCCAGCGAGGGAAATGCATATCTGCAGGAAGCTGAATTCTGGCGCCTCTACAAGGAAAACAAATCTCTCTGCTCCCTTGTCATGAAAACTGCAGCTGGGATTGTATATCTTCTTGCTTGTTTGTTAGAACCTTTTATTCCATCTTTCACTCTTGAAGTATTTAAGCAGCTAAATTTGCCTGTGGATACACATGTTTCACTTTGTGACGATAAAGGAGACATTGATAGGGTAAAAAGACCCTGGGATATCATAAGTGCTAGTCATAAAATTGGAACACCCAAGCCATTGTTCAGGGAACTGAAAGATGAAGAGGTGAAGTTCTACAGGAAGAAGTTCGCAGGAAGTCAAGCTGATAGGATTGTGCGTGCAGAGGCCGAAGCTCAGAATGTTGCTGAGCAACTGAAGAAAACGAAAGTTTCAGAACTTGTTAAGCGAAGGTATCCATTTAGAAGAGGTGCTACCAACGAGTGGGAATACCTAGTCAGTCAGTTGTTAGACACAATAGTCAGGTTCATTACAAAAAGCGCCGGCCTCACCCTTCCTTACCCTCCGTTTCTCAATCTCGCCGCCGGCGCAACTGCTTCATCTCTCCGGCGAACGCAACCGAATTCTTTTCCCATGGCAGAGAATCTGATAGCGCCGAAGCTTCCCGTCGAAGGAAAGCGCAACATTCTCATCACCAGTGCCTTGCCTTACGTCAACAACGTTCCTCACCTCGGCAACATCATTGGATGCGTGTTGAGTGCTGATGTATTCGCTCGCTACTGTCGGCTTCGCGGTTACAACGCTATTTACATCTGCGGTACTGATGAGTATGGAACTGCCACTGAGACTAAAGCCATGGAAGAAAACTGCTCTCCCAAAGAGATTTGTGACAAATATCATGCTATTCATAAGGAGGTCTACAATTGGTTCAATATAAGTTTTGATGAATTTGGACGGACGTCATCCCCTGAGCAAACTGAAGTTTGCCAAGCAATTTTCAGAAAGATATTCGAAAACAAGTGGCTATCCGAGAACACAATGCAGCAGCTTTACTGCAACACCTGTGAAAGGTTCTTGGCTGATAGGCTTGTGGAGGGAACCTGCCCGACTCCTGGCTGCGAGTATGATTCTGCCCGAGGAGACCAGTGTGAGAAGTGTGGAAAGCTTCTAAATCCAACAGAATTGAAAAATCCCAGATGCAAGGTTTGTCAGAAAACTCCTCATATTCGTGATACAGATCACTTGTTTCTTGAACTCCCCCTATTAAAAGATAGATTGGAAAAATACATCAGTGAGATGTCTGTGGTTGGTGGATGGAGTCAAAATGCTATCCAAACAACAAATTCATGGCTTAGAGAAGGGTTAAAGCCACGCTGTATTACGAGGGATCTAAAGTGGGGGGTTCCTGTTCCACATGAAAAATACAGTGACAAGGTTTTCTATGTATGGTTTGATGCACCTATTGGATATGTCTCAATCACTTCGTGCTACACACGTGATTGGGAGAAATGGTGGAAAAACCCAGAGAATGTGGAGCTGTATCAGTTTATGGGCAAGGACAATGTGCCATTCCATACTGTGATGTTTCCATCTACTCTACTTGGAACTAGTGAAAATTGGACTTTAATGAAGACTATTAGTGTTACTGAATACTTGAATTATGAAGCAGGGAAGTTTTCTAAGAGCAAAGGTATTGGGGTTtttggtaatgatgcgaaagatactaatattccagttgaagtatggagatattacttgctcacaaataggccggaggtatcagatacgttatttacatggccggacttgcaagctaaactaaatagtgAGTTACTGAATAATTTGGGCAACTTTATCAACCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGGCAAGGATATGATTCCATTATCCCCTCTGTTCCTGATAATGTAAGTGGTGACTCCCATGGTCCGACCAAAAAGTTGGCTGATAAAGTTGCTGCATATATAGACCAATACATAGAAGCAATGGAGAAGGTTAAACTGAAGCAAGGGTTGAAAACTGCAATGAGCATATCCAGCGAGGGAAATGCATATCTGCAGGAAGCTGAATTCTGGCGCCTCTACAAGGAAAACAAATCTCTCTGCTCTCTTGTCATGAAAACTGCAGCTGGGATTGTATATCTTCTTGCTTGTTTGTTAGAACCTTTTATCCCATCTTTCACTCTTGAAGTATTTAAGCAGCTAAATTTGCCTGCGGATACACATGTTTCACTTAGTGATGATAAAGGAGATGTTGATAGGGTAAAAAGACCCTGGGATATCATAAGTGCTGGTCATAAAATTGGAACACCCAAGCCATTGTTCAGGGAACTGAAAGATGAAGAGGTGGAGTTCTACAGGAAGAAGTTCGCAGGAAGTCAAGCTGATAGGATTGTGCGTGCAGAGGCCGAAGCTCAGAATGTTGCTGAGCAACTGAAGAAAACGAAAGTTTCAGATGGCAATGGAAAGAAAAAACCAGGAAAATCATCAAATGAAGCCAAAAATAAAGCTGCTGCTGAACCAGATATTACCATCACAAGGCTTGATATCCGGGTTGGCCTCATAATAAAAGCTCAAAAACATCCTGATGCAGATGCACTATATGTTGAAGAGATTGACGTCGGTGAAGAACAGACCAGAACTGTTGTCAGTGGGCTTGTCAAATTTATACCACTCGATGAAATGCAGAACCGAAAGGTCTGTGTTCTTTGCAACCTAAAGCCAGTAACCATGAGGGGCATTAAATCTCAAGCAATGGTTCTTGCTGCTTCCGATGGTGATCACACCAAGGTTGAGTTGGTTGAGCCTCCCAGTTCTGCTCAACCAGGAGAAAGAATTACATTCCCTGGGTATGAAGGTAATCCTGATGAACTCTTAAACCCAAAGAAGAAAGTTTGGGAAACATTGCAAGTCGATTTGCACACAAATGAGGAACTGGTGGCATGCTACAAAAATGTTCCACTCACCACATCAGCTGGCGTTTGCAAGGTTTCATCCATAAGCTGTGGATCCATAAGGTAG 4455 0.4061 MTENLKAPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEENCSPKEICDKYHAIHKEVYNWFNISFDEFGRTSSPEQTEVCQAIFKKIFENKWLSENTMQQLYCNTCERFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELKNPGCKVCQKTPRIRDTDHLFLELPLLKDRLEKYISEMSVVGGWSQNAIQTTNSWLREGLKPRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITSCYTRDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWSDLQAKLNSELLNNLGNFINRVLSFIAKPAGQGYDSIIPSVPDDVSGDSHGPTKKLADKVAAYIDQYIEAMEKVKLKQGLKVAMSISSEGNAYLQEAEFWRLYKENKSLCSLVMKTAAGIVYLLACLLEPFIPSFTLEVFKQLNLPVDTHVSLCDDKGDIDRVKRPWDIISASHKIGTPKPLFRELKDEEVKFYRKKFAGSQADRIVRAEAEAQNVAEQLKKTKVSELVKRRYPFRRGATNEWEYLVSQLLDTIVRFITKSAGLTLPYPPFLNLAAGATASSLRRTQPNSFPMAENLIAPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEENCSPKEICDKYHAIHKEVYNWFNISFDEFGRTSSPEQTEVCQAIFRKIFENKWLSENTMQQLYCNTCERFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELKNPRCKVCQKTPHIRDTDHLFLELPLLKDRLEKYISEMSVVGGWSQNAIQTTNSWLREGLKPRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITSCYTRDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPAGQGYDSIIPSVPDNVSGDSHGPTKKLADKVAAYIDQYIEAMEKVKLKQGLKTAMSISSEGNAYLQEAEFWRLYKENKSLCSLVMKTAAGIVYLLACLLEPFIPSFTLEVFKQLNLPADTHVSLSDDKGDVDRVKRPWDIISAGHKIGTPKPLFRELKDEEVEFYRKKFAGSQADRIVRAEAEAQNVAEQLKKTKVSDGNGKKKPGKSSNEAKNKAAAEPDITITRLDIRVGLIIKAQKHPDADALYVEEIDVGEEQTRTVVSGLVKFIPLDEMQNRKVCVLCNLKPVTMRGIKSQAMVLAASDGDHTKVELVEPPSSAQPGERITFPGYEGNPDELLNPKKKVWETLQVDLHTNEELVACYKNVPLTTSAGVCKVSSISCGSIR 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00171 1484 MobiDBLite consensus disorder prediction 1289 1316 - -
Gma12g00171 1484 Gene3D - 1321 1484 IPR012340 -
Gma12g00171 1484 CDD MetRS_core 17 387 IPR033911 GO:0004825|GO:0006431
Gma12g00171 1484 Pfam Anticodon binding domain of methionyl tRNA ligase 1122 1272 IPR041872 -
Gma12g00171 1484 Pfam Anticodon binding domain of methionyl tRNA ligase 441 591 IPR041872 -
Gma12g00171 1484 Gene3D HUPs 698 1081 IPR014729 -
Gma12g00171 1484 Gene3D HUPs 17 400 IPR014729 -
Gma12g00171 1484 Pfam tRNA synthetases class I (M) 699 1093 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma12g00171 1484 Pfam tRNA synthetases class I (M) 18 412 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma12g00171 1484 CDD MetRS_core 698 1068 IPR033911 GO:0004825|GO:0006431
Gma12g00171 1484 CDD Anticodon_Ia_Met 396 532 IPR041872 -
Gma12g00171 1484 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 1085 1269 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma12g00171 1484 TIGRFAM metG: methionine--tRNA ligase 18 538 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Gma12g00171 1484 TIGRFAM metG: methionine--tRNA ligase 699 1220 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Gma12g00171 1484 SUPERFAMILY Nucleic acid-binding proteins 1324 1468 IPR012340 -
Gma12g00171 1484 Gene3D - 401 574 - -
Gma12g00171 1484 Gene3D - 1082 1255 - -
Gma12g00171 1484 CDD tRNA_bind_EMAP-II_like 1321 1425 - -
Gma12g00171 1484 PANTHER METHIONINE--TRNA LIGASE 7 618 IPR023458 GO:0004825
Gma12g00171 1484 PANTHER METHIONINE--TRNA LIGASE 688 1484 IPR023458 GO:0004825
Gma12g00171 1484 SUPERFAMILY Nucleotidylyl transferase 15 399 - -
Gma12g00171 1484 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 7 618 - -
Gma12g00171 1484 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 688 1484 - -
Gma12g00171 1484 ProSiteProfiles tRNA-binding domain profile. 1322 1425 IPR002547 GO:0000049
Gma12g00171 1484 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 153 189 IPR029038 -
Gma12g00171 1484 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 404 588 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma12g00171 1484 Coils Coil 1276 1296 - -
Gma12g00171 1484 Gene3D - 834 870 IPR029038 -
Gma12g00171 1484 Gene3D - 153 189 IPR029038 -
Gma12g00171 1484 MobiDBLite consensus disorder prediction 1294 1309 - -
Gma12g00171 1484 CDD Anticodon_Ia_Met 1077 1213 IPR041872 -
Gma12g00171 1484 SUPERFAMILY Nucleotidylyl transferase 696 1080 - -
Gma12g00171 1484 Pfam Putative tRNA binding domain 1328 1423 IPR002547 GO:0000049
Gma12g00171 1484 Hamap Methionine--tRNA ligase [metG]. 16 586 IPR023458 GO:0004825
Gma12g00171 1484 Coils Coil 595 615 - -
Gma12g00171 1484 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 25 36 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma12g00171 1484 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 834 870 IPR029038 -
Gma12g00171 1484 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 706 717 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma12g00171 1484 PRINTS Methionyl-tRNA synthetase signature 20 33 IPR033911 GO:0004825|GO:0006431
Gma12g00171 1484 PRINTS Methionyl-tRNA synthetase signature 53 67 IPR033911 GO:0004825|GO:0006431
Gma12g00171 1484 PRINTS Methionyl-tRNA synthetase signature 101 112 IPR033911 GO:0004825|GO:0006431
Gma12g00171 1484 PRINTS Methionyl-tRNA synthetase signature 269 280 IPR033911 GO:0004825|GO:0006431
Gma12g00171 1484 PRINTS Methionyl-tRNA synthetase signature 304 319 IPR033911 GO:0004825|GO:0006431
Gma12g00171 1484 PRINTS Methionyl-tRNA synthetase signature 399 410 IPR033911 GO:0004825|GO:0006431
Gma12g00171 1484 Hamap Methionine--tRNA ligase [metG]. 697 1267 IPR023458 GO:0004825
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00171 Gma-Chr12 1302928 1314711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00171 K01874 - gmx:100809861 1633.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00171 12 1302928 1314711 Gma11g00843 11 7098871 7101349 GST