Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00164 ATGTCATCAAAACCATTCAAGCCAAGTCGGTTATCTCATTCTCAGTTAGCAACTTATGAGGCACCTGATTGCGAGAAGCCTCCTTTGCCTCCAACTATAACGTTTGGGCGAAGAACTCCCTCAGGTCGCTACATCAGCTACTCCAGAGATGATCTTGACAGTGAACTAGGTAGTGTTGACTTCACGAGTTACAGGGTGGACTTGCCACTAACCCCCGATAACCAACCTATGAATCCATCAATTTCACAGAAACTTGAGCAATATGTGTCAAGTTCACTTTTCACAGGAGGATACAACAGTGTTACTCACGCCCATCTAATGGATAAGGTGATAGAATCCCAAGCAAACCATTCACAGATGGCTGGTGCAAAAGGATCTTCATGTGCAATTCGTGGCTGTGATTGTAAGGTGATGAGTGATGAACATGGTGAGGATATTCTTCCTTGTGAGTGTGACTTTAAGATATGTAGAGACTGCTATAAAGATGCTGCAAAAGCAGGAGATGGAATCTGCCCGGGATGCAAAGAGCCCTATAAGAACACAGAGCTAGATGAAGTTGCTGCGGAAGATCTAAATGGAATGCCACTTCCACTTCCTCCCTCAGGTGGATGGTCTCAAATGGAGAGTGGAATGTCAGTGGTGGAGCCAACAAAGTCAGTGCTACTGAGAAGCCAGACTGGTGATTTTGATCACAATCGGTGGCTCTTTGAAACAAAGGGTACCTATGGCTATGGCAGTGCCATTTGGAAAAAGGGAGGAAATGGGAAAGAGGATGATGATGTTGTTGAGCCAACTGAGTTTATGAACAGACCCTGGAGGCCACTTACACGGAAACTGAAGATATCTGCTGCTGTTCTCAGCCCATATCGTCTCATAATTTTGATTCGCATGGTTGTCCTGATACTGTTCCTGGCTTGGAGGGTCAAGCACAAAAACACTGATGCAATCTGGCTATGGGGCATGTCTGTGGTTTGTGAGATATGGTTTGCCTTTTCTTGGCTTCTGGATCAACTGCCCAAGTTATGCCCAATAAACCGTTCCACAGATCTTAATGTTCTGAGGGAAAAATTAGAAATGCCAAGCCCTACCAACCCTACTGGAAAGTCTGATCTACCAGGCATAGATGTCTTTGTCTCTACTGCTGATCCTGAGAAAGAACCACCTCTTGTCACTGCAAACACCATCTTATCTATTTTAGCTGCAGACTATCCAGTTGAGAAACTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTTCTAACATTTGAGGCAATGGCTGAAGCTGCCAGTTTTGCTAATGTATGGGTTCCATTCTGCCGTAAGCATAATATAGAGCCTAGGAATCCTGAATCATATTTCAACTTAAAGAGAGATCCCTACAAAAACAAAGTGAAACCAGATTTTGTCAAGGATCGCAGACGGGTGAAGCGTGAGTATGATGAGTTCAAGGTCAGGATCAATGGTTTGCCTGACTCTATCCGTCGTCGGTCAGATGCCTTTCATGCAAGAGAGGAAATCAAGGCCATGAAACTTCAGAGACAGCACAACGAAGATGAACTTGTACAACCTGTAAAGATTCCGAAAGCAACATGGATGGCTGATGATGCTCATTGGCCAGGGACTTGGTTGAACCCTTCACCTGAGCATTCTAGGGGTGATCATGCCGGTATAATTCAGGTGATGTTGAAACCTCCTAGTGATGAACCTCTTTTTGGAAGTGTTGATGATACAAAGCTCATTGAACTGACTGATGTTGATATTCGTCTTCCCCTACTTGTTTATGTTTCTAGAGAGAAACGTCCAGGCTATGATCACAACAAAAAAGCCGGGGCCATGAATGCCTTggttcgagcctcagacatcatgtccaatgaacgacaccCTGGTTGCTGTAGTTGCTACTTTGGCAGTAGGAAGAAGAATGATAAAATCTCTGAGGAGAACAGGGCACTAAGGATGGATGACTCTGATGAAGAAGAAATGAATTTATCAGTGTTCCCTAAAATGTTTGGAAACTCAACTTTCCTCATTGACTCAATCCCAGTGGCAGAGTTCCAAGGCAGGCCACTTGCTGATCACCCTGCAGTGAAGAATGGACGCCCTCCAGGCGCCCTCACTGTACTGCGAGAGCTTCTTGATGCATCAACTGTGGCAGAGGCTATCAGTGTGATCTCTTGTTGCTACGAGGACAAGACTCAGTGGGGACAGCGTGTTGGATGGATCTATGGATCAGTTACTGAGGATGTGGTTACTGGCTATAGGATGCACAATAGAGGATGGAAATCAGTTTACTGTGTTACCAAGCGCGACGCATTCCGTGGAACTGCTCCAATCAATCTCACTGACAGGCTGCATCAGGTCCTTAGATGGGCAACTGGCTCAGTTGAAATATTCTTCTCAAGAAACAATGCACTTCTGGCTAGCCCAAGAATGAAGTTTCTTCAACGGATTGCATACCTTAATGTTGGAATCTATCCATTCACTTCCATATTCCTTATTGTCTACTGCTTCCTTCCTGCACTTTCCCTCTTCTCTGGCCAGTTCATTGTTCAAACTCTCAATGTCACATTTCTTGTTTATCTCTTGACCATCACCGTGACTTTGTGCGTGCTCGCGGTGCTTGAAATCAAGTGGTCTGGCATCGAGCTGGAAGAATGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGGACTAGTGCACACCTAGCTGCTGTGCTGCAGGGTTTGCTCAAAGTCATAGCAGGGACTGAAATCCCATTCGCCTTGACATCAAAATCTGCTGGGGATGTTGTAGATGATGAGTTTGCTGATCTCTATATTGTCAAGTGGACATCCATTATGATACCACCAATCACAATTATGATGGTTAACTTAATAGCAATAGCAGTTGGAGTTAGCAGGACCATATACAGTGTCATACCTCAGTGGAGCCGTCTACTAGGTGGTGTTTTCTTCAGTTTTTGGGTCTTGACTCATCTCTACCCTTTTGCCAAAGGTTTGATGGGAAGAAGAGGGACGACACCTACCATTGTTTTTGTATGGTCAGGTCTCATAGCAATCACTATATCACTCCTTTGGGTGGCAATCAATCCACCTGCTGATTACCTGAATGACGAGAAGGCCACTGAAGCAACCACTGATGTAGATGGTTGGCTTCATACAGGTGATATTGGCTATGTCGATGATGATGATGATGAGATTTTCCTCGTTGACAGGGCAAGGAAATCATCAAATTCAAAGGCTTCCTGGTGCCGCCAGCAGAACTTGAAGACCTTCTTATGA 3282 0.4427 MSSKPFKPSRLSHSQLATYEAPDCEKPPLPPTITFGRRTPSGRYISYSRDDLDSELGSVDFTSYRVDLPLTPDNQPMNPSISQKLEQYVSSSLFTGGYNSVTHAHLMDKVIESQANHSQMAGAKGSSCAIRGCDCKVMSDEHGEDILPCECDFKICRDCYKDAAKAGDGICPGCKEPYKNTELDEVAAEDLNGMPLPLPPSGGWSQMESGMSVVEPTKSVLLRSQTGDFDHNRWLFETKGTYGYGSAIWKKGGNGKEDDDVVEPTEFMNRPWRPLTRKLKISAAVLSPYRLIILIRMVVLILFLAWRVKHKNTDAIWLWGMSVVCEIWFAFSWLLDQLPKLCPINRSTDLNVLREKLEMPSPTNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHNIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAFHAREEIKAMKLQRQHNEDELVQPVKIPKATWMADDAHWPGTWLNPSPEHSRGDHAGIIQVMLKPPSDEPLFGSVDDTKLIELTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASDIMSNERHPGCCSCYFGSRKKNDKISEENRALRMDDSDEEEMNLSVFPKMFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTVLRELLDASTVAEAISVISCCYEDKTQWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLTITVTLCVLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGTEIPFALTSKSAGDVVDDEFADLYIVKWTSIMIPPITIMMVNLIAIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRGTTPTIVFVWSGLIAITISLLWVAINPPADYLNDEKATEATTDVDGWLHTGDIGYVDDDDDEIFLVDRARKSSNSKASWCRQQNLKTFL 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00164 1093 Pfam Cellulose synthase 374 625 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma12g00164 1093 Pfam Cellulose synthase 643 1035 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma12g00164 1093 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 41 624 - -
Gma12g00164 1093 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN D3 623 1034 - -
Gma12g00164 1093 SUPERFAMILY Acetyl-CoA synthetase-like 971 1073 - -
Gma12g00164 1093 MobiDBLite consensus disorder prediction 1 37 - -
Gma12g00164 1093 Gene3D Luciferase; Domain 3 1025 1072 - -
Gma12g00164 1093 MobiDBLite consensus disorder prediction 1 16 - -
Gma12g00164 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 193 IPR013083 -
Gma12g00164 1093 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 623 1034 - -
Gma12g00164 1093 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 41 624 - -
Gma12g00164 1093 SUPERFAMILY RING/U-box 113 182 - -
Gma12g00164 1093 Pfam RING/Ubox like zinc-binding domain 131 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00164 Gma-Chr12 1249852 1254919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00164 2 624 Glycosyltransferase AT3G03050 74.522 0.0 976
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00164 K20924 - gmx:100785985 1285.78