Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00126 ATGGCTACTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTCTTGAGTTCATCATACCATTACTCTGATATTATAGAAAAGCTTTCTTATGGCAGTGATTTTGGATCCACACACTACCAAATTGTTCCTACAAAATCTTTAATAGTTGCCAAGAAGTCATCCAACTATACTCCAACTTTTCCAGCATCGAACCAGCAGAATCAGTCCATTAAGGCTCTTAAGGAGCATGTTGATGATGCCCCTACCATTGCGGATCCATGGTTTCAGAGTTACAACTCTAATGACTTAGAGGTGGAAAGCTCTGAAATGGGTTATTCTGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTGGAAAAGCAATGGAACCTTTCCTTTGAAAGAGAAGTGCTTACTGAAAATTCGAGTAAGGGAAAAAAATGTAGGAAAGTGGCGGTGACTTGTTCTGGGGTGTCTGCAAGGCAAAGAAGAATGAATACCAAGAGGAAGACCGCTATTAAAACTTGTGGTGCTATGCAGCTGAAGTCCAAAATCAGTCCAGAGCTGCTTCAACACCGTTTGAAGGGCTACGTAAAAGGTCTAGTGAGTGAGGAATTGCTCTCTCATGCAGAAGTTGTAAACCTATCGGAGAAAATAAAAGTTGGGCTTTCCTTAGAGGAACATAAATCCAGACTGAAGGAAAAACTAGGATGTGAACCCTCTGATGATCAAATGGCAACTTCTTTGAAGATTTCTCGCACTGAACTACGAGCAAGAATGATAGAGTGCTCTCTGGCAAGAGAAAAGTTGGCTATGAGCAATGTACGCTTAGTTATGTCTATTGCCCAAAAGTATGATAACCTGGGTGCAGAAATGGGTGACCTTGTTCAGGGTGGCTTGATTGGATTACTGCGTGGTATTGAAAAGTTCGATTCTTCAAAAGGGTTTAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTTTAGTTGAGAATTCAAGAACATTAAGATTGCCTGCTCATTTGCATGAGAGATTATCTCTAATCCGCAATGCAAAGTTTAGACTAGAAGAGAGAGGCATTACTCCAACTATTGATAGGATTGCAAAATACCTTAACATGTCTCAAAAGAAAGTCAGAAATGCTACTGAGGCAATCAGCAAAATTATCTCGCTTGATAGAGAAGCATTCCCCTCTCTGAATGGTCTACAAGGAGAAACTCATCATAGTTATATTGCAGATAATCGAGTGGAGAACATCCCATGGAATGGAGTAGACGAGTGGGCACTAAAGGATGAAGTGAACAGACTCATTAATGTGACCCTTGTGGAACGAGAGAGAGAAATTATTCGACTTTATTATGGACTGGAAAAAGAATGTCTTACGTGGGAAGACATAAGCAAACGGATAGGTTTGTCAAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCGAGGAAGAGACAAATGGAAGCCATGCTATTGAAACATTAA 1512 0.4074 MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPTFPASNQQNQSIKALKEHVDDAPTIADPWFQSYNSNDLEVESSEMGYSVEALLLLQKSMLEKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRKTAIKTCGAMQLKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGETHHSYIADNRVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGLEKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRQMEAMLLKH 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00126 503 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 419 494 IPR013324 -
Gma12g00126 503 Gene3D RNA Polymerase Primary Sigma Factor 52 334 - -
Gma12g00126 503 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 1 503 - -
Gma12g00126 503 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 260 490 IPR014284 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 Pfam Sigma-70 region 3 343 414 IPR007624 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 PRINTS Major sigma-70 factor signature 288 301 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 PRINTS Major sigma-70 factor signature 312 320 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 PRINTS Major sigma-70 factor signature 441 453 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 PRINTS Major sigma-70 factor signature 461 476 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 PRINTS Major sigma-70 factor signature 476 487 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 188 334 IPR013325 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 336 392 IPR013324 -
Gma12g00126 503 CDD Sigma70_r4 430 488 - -
Gma12g00126 503 Gene3D - 419 498 IPR036388 -
Gma12g00126 503 Pfam Sigma-70, region 4 440 489 IPR007630 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 Gene3D - 335 385 IPR036388 -
Gma12g00126 503 ProSitePatterns Sigma-70 factors family signature 1. 288 301 IPR000943 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 Pfam Sigma-70 region 2 266 333 IPR007627 GO:0003700|GO:0006352|GO:0006355
Gma12g00126 503 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00126 Gma-Chr12 968725 972621 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00126 K03086 - gmx:100801884 976.467