Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00111 ATGAATTCCCTCGTTGCCCAAGCCGAATTTTCCGCTCCAATGGATTCAAAACCCAACCTTTGGAACACACCACCTTCAACTTGCAGCAGCTATAGCAGCAACAGCAGCGAGAGCGATGCCAGCCCCTTCTGTTCCCATCGCATACCCATAGCCATAGTTTCTGGCTTCTTCCACTCTCACCGATCACTCGCAGTTCTCTCGGGACACGTTGGCTCCGTTTCATGCTTGGCCTTATGCGGCGAGTTCATCCTCAGTGCCTCGCAGGGTAAGGATATCATAGTGTGGCAGCAACCAGATTTGAGGGTGTTTGCAAAGTTCGGACAAGGAGATGGGTCAGTGAAGGCACTTGCATCGGTTGGGAACAAGGTTTTCACCGCACATCAAGATAGCAGGATCAGAGTTTGGAAGGTGTCAAGAAGCTCAGAGAACGTGTTCAAGCTCGTTGATACTCTTCCCACAACCAAGGACTATTTGGGGAAGTTCATGAAGCAGAGCAACTATGTACAAACCCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCGGATAGCATTTCATGCTTGACGGTTTATAGCGGTTTGATTTATTCTGGGTCGTGGGACAAGACTCTTAAGGTGTGGAAGCTCTCGGATTTGAAGTGTTTGGAGTCTATAAAGGCTCATGATGATGCTATCAATGGGTTGGTGGCGTGTAAAGGGGTTGTGTATTCTGCTTCTGCTGATGGAAAGATTAAGGCTTGGGGGAGAAAAGATGGGAAGGGGGGGCATGCTTTGAAGGGGATTTTGGAGGGTCATAAAGATGTTTCTTTTAATGCTGTTGTTGTTTCTGAGGATGGGAAATGGGTTTATGGAGGAGGGTCTGATGGGTTTGTGATGGGGTGGGAGGGGTGTGGGGGGTTTGAGAGTTGTTGGAAGCTGGTTTCTGAGACCAAGGCACATGAGATAGCTGTGTTGTGTATGTGTTTAATGGGGGAGTTATTGTGCAGTGGATCAGCGGATAAAAGCATAGGGATTTGGAGGAGAGAGGCTTTTGGTAAGCTTTGTAAAGTTGGGGTCATAAGTGGTCATGAAGGGCCTGTGAAGTGTTTGCAGGCCTCATCTAATAGAATTGGTGGTGGCTTTTTGTTGTATAGTGGAAGCCTTGACAGAAGCGTTAGAGTTTGGTGGGTTCCAAGGTATAATAATGATGCAGAAGAAGTAAACGATAACAACTCCACAAGATTTGGCACAGTCAATCATCCCATGTTAGGATAG 1254 0.4753 MNSLVAQAEFSAPMDSKPNLWNTPPSTCSSYSSNSSESDASPFCSHRIPIAIVSGFFHSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFAKFGQGDGSVKALASVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYSGLIYSGSWDKTLKVWKLSDLKCLESIKAHDDAINGLVACKGVVYSASADGKIKAWGRKDGKGGHALKGILEGHKDVSFNAVVVSEDGKWVYGGGSDGFVMGWEGCGGFESCWKLVSETKAHEIAVLCMCLMGELLCSGSADKSIGIWRREAFGKLCKVGVISGHEGPVKCLQASSNRIGGGFLLYSGSLDRSVRVWWVPRYNNDAEEVNDNNSTRFGTVNHPMLG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00111 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 388 IPR001680 GO:0005515
Gma12g00111 417 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 404 IPR045182 -
Gma12g00111 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 217 IPR001680 GO:0005515
Gma12g00111 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 388 - -
Gma12g00111 417 Gene3D - 168 413 IPR015943 GO:0005515
Gma12g00111 417 PRINTS G protein beta WD-40 repeat signature 195 209 IPR020472 -
Gma12g00111 417 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Gma12g00111 417 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Gma12g00111 417 PANTHER OS01G0946100 PROTEIN 10 404 - -
Gma12g00111 417 Gene3D - 9 167 IPR015943 GO:0005515
Gma12g00111 417 SMART WD40_4 303 340 IPR001680 GO:0005515
Gma12g00111 417 SMART WD40_4 346 389 IPR001680 GO:0005515
Gma12g00111 417 SMART WD40_4 59 96 IPR001680 GO:0005515
Gma12g00111 417 SMART WD40_4 171 208 IPR001680 GO:0005515
Gma12g00111 417 SMART WD40_4 255 295 IPR001680 GO:0005515
Gma12g00111 417 SMART WD40_4 99 136 IPR001680 GO:0005515
Gma12g00111 417 SMART WD40_4 211 248 IPR001680 GO:0005515
Gma12g00111 417 CDD WD40 62 388 - -
Gma12g00111 417 Pfam WD domain, G-beta repeat 180 208 IPR001680 GO:0005515
Gma12g00111 417 Pfam WD domain, G-beta repeat 350 388 IPR001680 GO:0005515
Gma12g00111 417 Pfam WD domain, G-beta repeat 260 294 IPR001680 GO:0005515
Gma12g00111 417 SUPERFAMILY WD40 repeat-like 61 392 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00111 Gma-Chr12 873391 875013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00111 181 344 Miscellaneous Gene Families AT5G08390 27.841 2.69e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00111 - - gmx:100775295 838.565