Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00110 ATGTTTGTGTTTGGGTCATTTACTGAAGATGAAACCCGATCATTGCTGTCAAAGCAGTCTTTTGGGAAAAAGGAAAAGCCTGTGGAGAAGAATCAGCTGCAATTTGGTTCTCTGAATTCTGTTACTGTTGAGTCAAACAATCTGCTAAATTCATCAAAAGCACCTTATAATGCTCCACCCTCTGATTCTCGGAAATGTAATGGAGTGAAAAGTGCCATTGATAATTCACCTGAAGTGTCAGGGACAGTTAAAGAGAATGGCAGCATTACCAATATCTCCCCTAGGTCCACCAGTACCATTAGTGTAAATGAAGTTGAAGAAAAAAATGTGAATTTTTTTACATTACGTTGTGAAGATGGTCCCTTAAACAAGTTTACAAAGTTGAGCCTAGATGCTTCTGAGGCTGAAAGCTTGAAGAATGTACATACAACTGGCAGTGGGGATGATTCTGCACCAAAGTTACCTGATCGAGAGCCCCAAAAGGCACCTAATGGGCATGCTGTTATGCATGTTAAGGATATACTGCCTCGAGGCCTTATCAACTCTGGGAATCTATGTTTTCTTAATGCAACCATGCAGGCTCTCTTGTCATGCTCACCCTTCGTTCATCTTTTACAGCAATTAAGAACTTGCAACCTTCCTAAGGTTGGATATCCCACATTGACGGCATTTGCTGAGTTCATAACCCAATTTGATATGCCAAGCATAACTAAATTAAAGAAGCAAGATGCAGATACGTTTGAGTCTGGAAGGCCATTTCGCCCTGTTATGTTTGAAGGTGTCCTAAAAATTTTTACTCCGGATGTGCCAAATAGCATTTCAGGAAGACCAAGACAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTACTGAAGCTTGAAGGACAGTCTTCAAGTCTTAATGGTAGCAAATCTTCTCTGGTTTCTTCGGTGGAAGATGATGAATGGGAAACAGTGGGGCCGAAGAATAAATCTGCTGTTACAAGGACTCAAAGCTTTCTCCCATCAGAATTAAGTGGTATTTTTGGAGGACAACTTAGAAGTTTGGTGAGAGCTAAAGgaaatagagcttctgctactgttcaaccatatctcttgctccatcttgacatctatcctgatgctgttcacacaattgaggatgcacttcacttgttTTCTGCACCAGAGACTCTTGAAGGGTACCGAACATCACTCACTGCAAAGGCTGGTGTTGTGACTGCAAGAAAATCTGTTCAAATAGTGACACTTCCTAAAATAATGATATTGCACCTTATGCGTTTTGGCTACGGAAGCCAGGGTAGCACCAAGTTGCATAAGCCTGTGCACTTCCCTCTTGAGTTGGTATTGGGTCGTGACTTGCTTGTTTCACCATCTACTGAGGGTCGAAAGTATGAACTTGTTGCTACAATTACTCACCATGGAATGGAGCCTTCAAAGGGGCACTACACAGCTGATGCCCAATATCCCAATGGTCGGTGGCTACGATTTGATGACCAATCTGTCTTTGCTATTGGAACAAATAAGGTGCTGCATGATCAGGCATATGTCCTTTTCTACAGACAGATTTGA 1593 0.3923 MFVFGSFTEDETRSLLSKQSFGKKEKPVEKNQLQFGSLNSVTVESNNLLNSSKAPYNAPPSDSRKCNGVKSAIDNSPEVSGTVKENGSITNISPRSTSTISVNEVEEKNVNFFTLRCEDGPLNKFTKLSLDASEAESLKNVHTTGSGDDSAPKLPDREPQKAPNGHAVMHVKDILPRGLINSGNLCFLNATMQALLSCSPFVHLLQQLRTCNLPKVGYPTLTAFAEFITQFDMPSITKLKKQDADTFESGRPFRPVMFEGVLKIFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKLEGQSSSLNGSKSSLVSSVEDDEWETVGPKNKSAVTRTQSFLPSELSGIFGGQLRSLVRAKGNRASATVQPYLLLHLDIYPDAVHTIEDALHLFSAPETLEGYRTSLTAKAGVVTARKSVQIVTLPKIMILHLMRFGYGSQGSTKLHKPVHFPLELVLGRDLLVSPSTEGRKYELVATITHHGMEPSKGHYTADAQYPNGRWLRFDDQSVFAIGTNKVLHDQAYVLFYRQI 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00110 530 Pfam Ubiquitin carboxyl-terminal hydrolase 178 527 IPR001394 GO:0004843|GO:0016579
Gma12g00110 530 Gene3D Cysteine proteinases 165 530 - -
Gma12g00110 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 472 490 IPR018200 GO:0004843|GO:0006511
Gma12g00110 530 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 530 - -
Gma12g00110 530 SUPERFAMILY Cysteine proteinases 173 529 IPR038765 -
Gma12g00110 530 MobiDBLite consensus disorder prediction 76 98 - -
Gma12g00110 530 MobiDBLite consensus disorder prediction 137 165 - -
Gma12g00110 530 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 530 - -
Gma12g00110 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 178 193 IPR018200 GO:0004843|GO:0006511
Gma12g00110 530 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 177 530 IPR028889 -
Gma12g00110 530 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00110 Gma-Chr12 864766 870587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00110 174 530 Miscellaneous Gene Families AT2G24640 28.493 8.65e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00110 K11841 - gmx:100816791 1031.55