Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00103 ATGGATAGTTACGAAGCTACAAGAATTGTGTTTTCAAGGATCCAAAACTTGGATGCTGAAAATGCTTCCAAAATCATGGGTTTACTTCTGCTTCAGGACCATGGTGAGAAAGAAATGATTAGATTAGCATTTGGTCCAGAAGCACTTGTTCACTCTGTGATTCTCAAAGCCCGCAAGGACTTGGGTTTACCTTCGAACTCTCCGCCCACACCCTCCACTCCTCCCTCTCCTTCACCCTTCATTTCTAGGCAAAACTCAAACACTTCTTCAAGACTCAGTGTCAGTGGTATCAACCTCCCTCCTCCTCTCACTATCCCAAACCCTTCTGCTTCATGGCCTACTATGTCTGAGCTTCAAACCGATTTGGTTGCTGGCTCTTCTACTTCTTTATCTTCCTTACCCTTCTATGCTAACGGAGGCTCGGATCCAATTGATGAGTTCCAACTTCAAGACCAGCTTTCTTTCCTGAATGATGGTTCTAATACTAGCATTTCTCACAAGAACAACCCAGATTTGTTTTACCCGACTTACTCAGACTTTTCTTCAAGTCCTACTACTGCTGCTGACCCTACCCTTTTTCCTTCCTATGGTTGGGGAGGGTCTCTTCATCGTAGGAGTTGTTCAGTCAATGATGCTTGTTTGGGCACTGAGGACCCTAATTCTGGGTTGGGATGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGTAAAAATGGGACTAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGCTGATGCTGCAATGGTTGGCTCTCCTAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTACGATCCAAATCTGCTCAACAACAAAGATTGGCTGCTGCTTCTCAGCTCATGTCCTCTTCCACTTTTCCATACTCCCCTAAGTGCATGAATTTCCTGTTGCAGCAGCAACAGAATGATACCCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTTTGAACAGTCCTGGCATGGTAAACCCAGCTTCCAGGCAGATCTACTTGACTTTCCCAGCAGATAGCACTTTCAGGGAGGAAGATGTTTCAAATTACTTCAGCATATATGGTCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTTACCTTTGTTTATCCAGAGACCGTGAAGCTTATTCTATCTAAAGGAAACCCTCATTTTGTGTGTGATGCACGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGAAGCTGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGATTAGATGCTAGAGACCAATTTGATCTTCAACTTGGTAGAGGCAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAAGCTCTTGAGCTACAAAGTAGGAGGCTAATGGGTCTACAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTTTCCGCCGGAAGCCCAATTCCTTCCCCCACCCATTCTCCTAACATGTTCAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGGAGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTCAACAGCAGGTCAACATTTCTGTTGGCAAGGAAGTGGATGTCAATGGTGAGAATGGGTATGATGAAGGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGATGGAGACTTCATGACATGGGAACTTTCAAATCCTTTAATTGCCAAATACCAAGGTTCTCTTCTGGCCATGGAACTATTGGTATGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGGAAGTGA 2004 0.4531 MDSYEATRIVFSRIQNLDAENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKDLGLPSNSPPTPSTPPSPSPFISRQNSNTSSRLSVSGINLPPPLTIPNPSASWPTMSELQTDLVAGSSTSLSSLPFYANGGSDPIDEFQLQDQLSFLNDGSNTSISHKNNPDLFYPTYSDFSSSPTTAADPTLFPSYGWGGSLHRRSCSVNDACLGTEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADAAMVGSPSKIEMMEQCHELLRSKSAQQQRLAAASQLMSSSTFPYSPKCMNFLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKLQQQQVDRGDFSPCGTPTGLDARDQFDLQLGRGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSAGSPIPSPTHSPNMFNQNLVPSFHITSEAPKESGSSSAPASIASVSVGQQQVNISVGKEVDVNGENGYDEGNGKQSSSHEDRDLQECLEHNLPDSPFASPTKADGDFMTWELSNPLIAKYQGSLLAMELLVCSQAPVDRLAFSFLMFRK 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00103 667 Gene3D - 217 308 - -
Gma12g00103 667 SMART rrm1_1 354 424 IPR000504 GO:0003723
Gma12g00103 667 MobiDBLite consensus disorder prediction 79 97 - -
Gma12g00103 667 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 633 - -
Gma12g00103 667 SUPERFAMILY RNA-binding domain, RBD 365 441 IPR035979 GO:0003676
Gma12g00103 667 CDD RRM_AtC3H46_like 355 424 IPR034365 -
Gma12g00103 667 MobiDBLite consensus disorder prediction 432 454 - -
Gma12g00103 667 SUPERFAMILY CCCH zinc finger 225 247 IPR036855 GO:0046872
Gma12g00103 667 MobiDBLite consensus disorder prediction 577 601 - -
Gma12g00103 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 365 410 IPR000504 GO:0003723
Gma12g00103 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 429 IPR000504 GO:0003723
Gma12g00103 667 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 633 - -
Gma12g00103 667 MobiDBLite consensus disorder prediction 61 101 - -
Gma12g00103 667 ProSiteProfiles Zinc finger C3H1-type profile. 222 249 IPR000571 GO:0046872
Gma12g00103 667 SMART c3hfinal6 224 248 IPR000571 GO:0046872
Gma12g00103 667 Gene3D - 351 449 IPR012677 -
Gma12g00103 667 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 247 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00103 Gma-Chr12 793301 809917 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00103 - - gmx:100797806 1166.37