Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00048 ATGATGGTGATTGCCACAATGACAAGGGCAGCTTCAATTAACTATGCAGAAGCATTAGCAAAGAGCATCTTGTTTTTTGAAGGTCAGAGGTCTGGCAAGTTACCACCTTCTCAACGCATCAAATGGCGGAAAGACTCTGCACTTCATGATGGCTCAGACATTCATATGGATATGGTAGGTGGATACTATGACGCTGGCGACAATGTGAAATTCAATTTTCCCATGGCATTCACAATGAGCATGCTAGGTTGGAGTGTCTTAGAATTTGGAGATCTGATGGGTTCAGAGTTGCAAAATGCATTGGAAGCAATCCGGTGGGGAAGTGATTATTTTCTCAAAGCCACAAAATATCCTAATATAGTTGTGGCACAAGTTGGCAATCCCATTGCCGATCACGGTTGTTGGGAGAGGCCAGAAGACATGGACACTCCTCGAACCTCCTACTTTGTTTCTCAGAAAAGGCCAGGTTCAGAACTCTCTGCTGAGATTGCTGCCGCACTTGCAGCATCTTCCATGGCTTTTAGGAAAACTGATCCTCACTATTCCAACTTGCTTCTCATTAAGGCTATGCAGGTATTTGACTTTGCAAATAAATATCGTGGATCTTATAATAACAGCGTCGGTGCGGGAGCATGCCCCTTCTACTGTGATATTAGTGGCTACATGGATGAGTTGATTTGGGGAGCAGCATGGTTGTATAAAGCCAGTAATAGGCCCAATTATCGGGATTTTGTGAAAGCAAACATCCAATCCATTGGCAATCTTGATGAATTTGGATGGGACTGCAAGCATGCTGGCATAAATGTGCTTGTTTCGCAGTGGGCGATGGCTGATGCATCCAGTAGAGATCTTTTCATTCCTAATGCAGATAAATTTATATGCTCGTTGTTGCCGAGTTCGCCCACCAAATCTGTCTCGTACTCTAAAGGTGGACTTCTATTCAAACCTGGAGGATGTAACCTACAACACACAACAGCTCTGTCATTTCTTTTAATTGTTTATGCACGTTACATGCAATCTGCGAAGAAAACAGTAACATGTGGGAATGAAGTTGCCGACCCAGCTAGGCTCATAAATCTTGCAAAAAGTCAGGTGGATTACATATTGGGAAAGAACCCACTAGGAATGTCATACATGGTAGGGTATGGAGGCAAGTACCCTGAGAAGATACACCACCGAGGTTCAACTTTACCATCTGTGGATATGCACCCACAACATATCCAGTGTCGTGAGGGAGACCAATATTTCAAATCAGAAAAACCCAATCCTAACATCCTAACAGGGGCTGTGGTTGGAGGACCTGCGGAAGATGATTCTTTTCAGGATTCGCGCTATAATGCTGGTCAATCAGAGCCAACAACATACGTCAATGCTCCTTTTGTTGGTCTTTTGGCTTACTTCAACAAGCCTACTATTAGTTAG 1422 0.4367 MMVIATMTRAASINYAEALAKSILFFEGQRSGKLPPSQRIKWRKDSALHDGSDIHMDMVGGYYDAGDNVKFNFPMAFTMSMLGWSVLEFGDLMGSELQNALEAIRWGSDYFLKATKYPNIVVAQVGNPIADHGCWERPEDMDTPRTSYFVSQKRPGSELSAEIAAALAASSMAFRKTDPHYSNLLLIKAMQVFDFANKYRGSYNNSVGAGACPFYCDISGYMDELIWGAAWLYKASNRPNYRDFVKANIQSIGNLDEFGWDCKHAGINVLVSQWAMADASSRDLFIPNADKFICSLLPSSPTKSVSYSKGGLLFKPGGCNLQHTTALSFLLIVYARYMQSAKKTVTCGNEVADPARLINLAKSQVDYILGKNPLGMSYMVGYGGKYPEKIHHRGSTLPSVDMHPQHIQCREGDQYFKSEKPNPNILTGAVVGGPAEDDSFQDSRYNAGQSEPTTYVNAPFVGLLAYFNKPTIS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00048 473 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 367 393 IPR018221 -
Gma12g00048 473 PANTHER ENDOGLUCANASE 1 470 - -
Gma12g00048 473 Gene3D - 10 472 IPR012341 GO:0005975
Gma12g00048 473 PANTHER ENDO-1,4-BETA-GLUCANASE 1 470 - -
Gma12g00048 473 Pfam Glycosyl hydrolase family 9 15 464 IPR001701 GO:0004553|GO:0005975
Gma12g00048 473 SUPERFAMILY Six-hairpin glycosidases 14 469 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00048 Gma-Chr12 357438 360627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00048 10 468 Glycoside Hydrolase AT1G70710 59.827 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00048 K01179 - gmx:100814370 929.858