Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00044 ATGATAGGCACGCTGGGCATCAAAATTGACCCTGAAATCTATGCCTCTCTGTTAGAAACCTGCTACCGCTCCCACGCCGTTCGTCACGGTATCCGAGTTCATCGCCTCATCCCAACATCCCTGTTGCATAAAAATTTCGGCATTTCCTCCAAGCTTCTTAGGTTGTATGCTTCGTGTGGGTATCTCGATGATGCCCACGACCTGTTTGATCAAATGGCTAAGAGGGATACGTCTGCATTTCCCTGGAATTCACTCATCTCAGGATATGCCCAAGTGGGCCACTACGATGATGCCATTGCACTCTACTTCCAAATGGTGGAAGAGGGTGTTGACCCTGACTTGTTCACCTTCCCGCGGATTCTCAAAGTTTGTGCCAGAATTGGGTCCGTTCAAGTGGGGGAAGAGGTGCATCGCCATGCTGTTCGTGCTGGCTTTGCCACTGATGGTTTTGTCCTCAATGCACGTGTTGAAAGATCTTTGATAAGATgcctcatagagaccccgcctcatagagaccccgTTCCGTGGAATTCAATGCTCACAGCTTATGTTCATCATGGTCTTGAGGTTGAGGCAATGAAAATTTTCCGCCAAATGATTTTAGCAGGACTGATTAAAAAGGCTTATAGCATCATAGTCGATGGAATGGGCTCTGAGGCTGCTGGTCCAACTCTGTGGGGAGCTTTATTATATGCCTGCTTTATGCACGGTGATGCTACTATAGGGGAGATTGCTGCAAACAGGCTTTTTGATTTAGAGCCAGACAATGAACATAATTTTGTACTTCTTATGAGGATTTATGAAAATGCAGGCAGATTAGAAGACATGGAGAGAGTTAGAATGATGCTGGTTGACAGAGGATTGGATTATTAG 873 0.4387 MIGTLGIKIDPEIYASLLETCYRSHAVRHGIRVHRLIPTSLLHKNFGISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDDAIALYFQMVEEGVDPDLFTFPRILKVCARIGSVQVGEEVHRHAVRAGFATDGFVLNARVERSLIRCLIETPPHRDPVPWNSMLTAYVHHGLEVEAMKIFRQMILAGLIKKAYSIIVDGMGSEAAGPTLWGALLYACFMHGDATIGEIAANRLFDLEPDNEHNFVLLMRIYENAGRLEDMERVRMMLVDRGLDY 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00044 290 TIGRFAM PPR: pentatricopeptide repeat domain 176 203 IPR002885 -
Gma12g00044 290 TIGRFAM PPR: pentatricopeptide repeat domain 82 113 IPR002885 -
Gma12g00044 290 Gene3D Tetratricopeptide repeat domain 158 289 IPR011990 GO:0005515
Gma12g00044 290 Gene3D Tetratricopeptide repeat domain 1 157 IPR011990 GO:0005515
Gma12g00044 290 Pfam E motif 236 283 IPR046848 -
Gma12g00044 290 Pfam PPR repeat 175 203 IPR002885 -
Gma12g00044 290 Pfam PPR repeat 52 75 IPR002885 -
Gma12g00044 290 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Gma12g00044 290 PANTHER OS01G0913400 PROTEIN-RELATED 6 202 - -
Gma12g00044 290 PANTHER OS01G0913400 PROTEIN-RELATED 202 289 - -
Gma12g00044 290 PANTHER - 6 202 - -
Gma12g00044 290 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Gma12g00044 290 Pfam PPR repeat family 82 125 IPR002885 -
Gma12g00044 290 PANTHER - 202 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00044 Gma-Chr12 334826 336392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00044 14 288 Glycoside Hydrolase AT3G49170 21.194 9.39e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00044 - - gmx:112997711 345.895