Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00018 ATGGCCCAAAATGATTCCAACCCTACTCCGCCTCCGGAACCCCTTGTAGCGGCGGAACCCATTACTGAGGATTTGGTCCAAGACAAAGAAGAAGAGGATGATAGTAGTAAGATTGTTATTCCAGTCCCAGAGAGCGAGTCCTTGTCATTGAAGGAGGATAGCAATAGGGTTTCTGATTCCGAGAAAAATGCCATTGATGAGCTGAAGAAGCTCCTGAAAGAGGAATTAGAGGACGAGGAGGTTTCCATCTGGGGCGTCCCTCTCTTTAAGGATGACAGGACTGACGTCATTCTCCTCAAGTTTCTCAGAGCTCGTGAGCTCAAAGTGAAGGACGCCCTTGTCATGTTTCAAAACACTCTCCGATGGAGGAAGGACTTCAACATCGACGCCCTTCTGGATGAAGATCTGGGCGACCACTTGGAGAAGGTTGTCTTCATGCACGGACACGGCAGAGAGGGCCATCCCGTCTGTTACAACGTCTACGGCGAGTTCCAGAACAAGGACCTCTACCACAAGGCCTTCTCCTCTCAGGATAATCGAAACAAGTTTCTCCGATGGCGTATTCAGTTGTTGGAGCGCAGTATTCGGCACCTCGACTTCACTCCTTCCTCCGGCATCAACACCATTTTCCAAGTCAATGACCTCAAAAACTCCCCTGGCCCTGCTAAACGTGAGCTTCGCCTTGCCACCAAACAAGCTTTGCAGTTGCTTCAGGACAACTATCCCGAATTTGTTGCCAAACAGGTTTTTATCAACGTCCCATGGTGGTATCTTGCTTTCTATACCATGATCAATCCCTTCTTGACTCAGAGGACCAAAAGCAAATTTGTCTTTGCTGGACCATCCAAGTCCCCCGATACTCTTTTCAAGTATATTTCTCCTGAGCAAGTGCCCGTTCAGTATGGTGGCCTCAGTGTAGATTTCTGTGACTGCAACCCCGATTTCACTATGTCTGATCCTGTCACCGAAATTCCTATAAAGCCTACCACTAAGCAAACTGTGGAAATTGCTATTTATGAGAAGTGCATTATTGTTTGGGAGCTGCGCGTGGTGGGCTGGGAGGTTAGCTACAATGCTGAATTCAAGCCTGATGTTGAAGATGCATATACGGTTATCATACAGAAGGCCACAAAGATGTCCCCTACCGATGAACCAGTTGTTACCAATAGCTTTAAAGTTGTTGAACTGGGAAAATTGTTGCTCACCATAGACAATCCTACCTTGAAAAAAAAGAGGCTTCTTTACAGGTTCAAGATCAAACCCTACTCTGATTGA 1275 0.469 MAQNDSNPTPPPEPLVAAEPITEDLVQDKEEEDDSSKIVIPVPESESLSLKEDSNRVSDSEKNAIDELKKLLKEELEDEEVSIWGVPLFKDDRTDVILLKFLRARELKVKDALVMFQNTLRWRKDFNIDALLDEDLGDHLEKVVFMHGHGREGHPVCYNVYGEFQNKDLYHKAFSSQDNRNKFLRWRIQLLERSIRHLDFTPSSGINTIFQVNDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFVFAGPSKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFTMSDPVTEIPIKPTTKQTVEIAIYEKCIIVWELRVVGWEVSYNAEFKPDVEDAYTVIIQKATKMSPTDEPVVTNSFKVVELGKLLLTIDNPTLKKKRLLYRFKIKPYSD 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00018 424 PANTHER PATELLIN-3 76 424 - -
Gma12g00018 424 Pfam CRAL/TRIO domain 142 303 IPR001251 -
Gma12g00018 424 CDD SEC14 140 304 IPR001251 -
Gma12g00018 424 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Gma12g00018 424 Gene3D GOLD domain 316 420 - -
Gma12g00018 424 SUPERFAMILY CRAL/TRIO domain 143 311 IPR036865 -
Gma12g00018 424 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 133 303 IPR001251 -
Gma12g00018 424 PANTHER PATELLIN-1 76 424 IPR044834 GO:0008289
Gma12g00018 424 SMART sec14_4 138 306 IPR001251 -
Gma12g00018 424 MobiDBLite consensus disorder prediction 26 57 - -
Gma12g00018 424 ProSiteProfiles GOLD domain profile. 314 419 IPR009038 -
Gma12g00018 424 SUPERFAMILY CRAL/TRIO N-terminal domain 55 135 IPR036273 -
Gma12g00018 424 Coils Coil 58 78 - -
Gma12g00018 424 Pfam CRAL/TRIO, N-terminal domain 64 118 IPR011074 -
Gma12g00018 424 Gene3D - 30 315 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00018 Gma-Chr12 148490 150629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00018 98 298 Acyl Lipid Metabolism Gene Families AT1G55840 29.384 1.70e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00018 - - gmx:100804006 839.336