Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00013 ATGGAGGACATTGAGGATTTGCTGATTGGAAGTGCAACTCCACCGGGCTTTCGTTTGCCATTAGCAGCGGCTGTTGGCGTGGGGACAAAGCGGAATCAACTCTCTTCTTCTTCGCTTTCGCCTTCACCTGCAATCCCTGGCACTCAGACTATCTTCATAAAGACCTTTGGCTGCTCTCATAACCAGAGTGACAGTGAATATATGGCTGGTCAGCTTTCTGCTTTTGGCTATTCATTGAGCGATGATCCTGACCATGCAGATCTCTGGCTCATCAACACTTGCACGGTCAAATCCCCAAGTCAATCTGCTATGGATACCATCATATCAAAAGGAAAATCTTCAAATAAACCACTAGTTGTTGCTGGTTGTGTCCCTCAAGGAAGTCGGGATTTGAAAGAGCTCGAAGGAATCAGCATAGTTGGAGTCCAGCAAATCGATCGTGTTGTTGAAATTGTAGAGGAGACTTTAAAAGGTCATGAAGTGCGTCTTTTGACCCGTAAGAAATTGCCAGCACTTGACCTTCCAAAGGTAAGGAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGAAGTTACACAATTGATAGCCTTGTTGGGCGTGTAAAATCTGTCATATCTGAAGGGGTTAAAGAGATATGGCTTAGCAGTGAAGACACTGGAGCATATGGTCGTGACATTGGTGTCAATCTTCCAACATTATTGAATGCCTTAGTAGCAGAACTACCAGCTGATGCAAGCACAATGTTGCGTATTGGAATGACTAATCCACCATATATACTTGAACACTTGAAGGAGATTGCTGAGATTTTGCGCCATCCATGTGTTTACTCTTTTCTGCATGTACCGGTTCAATCTGGAAGTGATACCATTTTGAGTGCAATGAATCGAGAATATACTGTGAGCGAGTTCAGGACTGTTGTAGATACTCTAACTGAGCTTGTGCCAGAGATGCAGATTGCCACTGATATAATATGTGGATTTCCTGGTGAAACTGATGAAGATTTTTTGCAAACTATCAACCTTATTAAAGAGTACAAGTTACCTCAAGTTCATATTTCACAATTTTATCCTCGACCAGGGACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTTAAGAGAAGAAGCCGTGAACTGACAAATGTCTTTGAATCCTTCACACCATACTCTGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGATATTGCATCTGATGGAGTTCACTTGGTTGGTCATACAAAAGGATATATACAAGTTCTTGTACTTGCTCCAGACAATATGCTGGGAACTTCAGCTATGGTTAAGATAACATCCGTGGGAAGGTGGTCAGTTTTTGGGGATGTAATTGAGACAGTGAACCCTGTAAGTGACAATAAAGCTCTAAACAAGCTGGTTCCTAATCAGGATTGCGGTAACTCAGCCAAGACTGGTGGATTTTCAGAAGAGCCAGAATATTGTGCCTGTGGAAATGACATCTGTTGTGGTCAGGGTACTCTCGAAAATAATGATAATTCAAGAGGCAGTGCAGTGCCACAGAACCAAAGCAAAAGAAATTTCATTGGATGGATGCTGAGGAAGCGGGAGCATCTGCACAAAACGGTTGAGAGTGAGCTTGCCTCGGGATCTGTTAAAAAGCAAGAAGGAATCATGAGGAAGTGGGACTTCGTTGATAAGGTTCTTTTGGGTGGAATATCTATCAGCATCTTGACGATTATGGCTCTAGTAGTAGCTGTTATGTTTAGAGTTATTTGGTCCCAATAA 1830 0.4251 MEDIEDLLIGSATPPGFRLPLAAAVGVGTKRNQLSSSSLSPSPAIPGTQTIFIKTFGCSHNQSDSEYMAGQLSAFGYSLSDDPDHADLWLINTCTVKSPSQSAMDTIISKGKSSNKPLVVAGCVPQGSRDLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKKLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISEGVKEIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPYILEHLKEIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGETDEDFLQTINLIKEYKLPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFESFTPYSGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVLAPDNMLGTSAMVKITSVGRWSVFGDVIETVNPVSDNKALNKLVPNQDCGNSAKTGGFSEEPEYCACGNDICCGQGTLENNDNSRGSAVPQNQSKRNFIGWMLRKREHLHKTVESELASGSVKKQEGIMRKWDFVDKVLLGGISISILTIMALVVAVMFRVIWSQ 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00013 609 ProSiteProfiles TRAM domain profile. 411 473 IPR002792 -
Gma12g00013 609 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 50 467 IPR005839 GO:0006400|GO:0016740|GO:0051539
Gma12g00013 609 CDD Radical_SAM 186 390 - -
Gma12g00013 609 PANTHER RADICAL SAM PROTEINS 1 569 - -
Gma12g00013 609 Pfam Uncharacterized protein family UPF0004 51 129 IPR013848 GO:0035596|GO:0051539
Gma12g00013 609 SUPERFAMILY Radical SAM enzymes 170 406 - -
Gma12g00013 609 Gene3D tm_1862 like domain 180 410 IPR023404 -
Gma12g00013 609 Gene3D - 50 170 IPR038135 -
Gma12g00013 609 SFLD Radical SAM 127 396 IPR007197 GO:0003824|GO:0051536
Gma12g00013 609 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 49 157 IPR013848 GO:0035596|GO:0051539
Gma12g00013 609 ProSiteProfiles Radical SAM core domain profile. 178 411 IPR007197 GO:0003824|GO:0051536
Gma12g00013 609 SFLD B12-binding domain containing 127 396 - -
Gma12g00013 609 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 51 471 IPR006466 GO:0035598|GO:0035600
Gma12g00013 609 ProSitePatterns Methylthiotransferase radical SAM domain signature. 186 206 IPR020612 GO:0051539
Gma12g00013 609 SMART MiaB 182 406 IPR006638 GO:0003824|GO:0051536
Gma12g00013 609 Pfam Radical SAM superfamily 189 361 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00013 Gma-Chr12 111286 115962 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00013 K15865 - gmx:100798865 1210.67