Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00010 ATGCGCGTGGCAGCTGGAGTGAAATGTTTGTTGAGAGTCAGACAATGGAATTGGAGAGTTCAGGGGACGAAGCATTACTCTAGCGAAAGGGTCCTTCAGTTTTATGCTTCTTTCATGAATTCAGGGCATTCCCCTGACCAATTCACTTTCGCAGTCACTTTGTCCGCTTGTGCAAAACTCCAGAATCTTCATTTGGGCAGGGCAGTTCACTCTTGTGTAATTAAGAGCGGCCTTGAATCCACCTCCTTCTGTCAAGGCGCTCTTATCCATCTCTACGCCAAATGCAACTCACTCACTTGTGCTCGCACCATATTCGCATCTGCACCATTCCCCCACCTCCACACTGTTTCTTGGACCGCTTTAATCTCTGGCTACGTTCAAGCCGGCTTGCCCCACGAGGCACTCCACATATTTGACAAAATGCGCAACAGTGCTGTTCCAGACCAAGTGGCGCTTGTCACCGTCTTAAATGCTTACATCTCTTTAGGAAAGCTGGATGATGCCTGCCAATTGTTTCAACAGATGCCCATCCCCATCCGCAATGTTGTCGCATGGAATGTCATGATTTCTGGTCATGCCAAGACAGCCCATTATGAGGAGGCTCTTGCCTTCTTTCATCAAATGAGTAAGCATGGGGTCAAATCCTCAAGATCCACACTCGCAAGTGTTTTAAGTGCAATTGCCAGCTTAGCTGCCCTCAATCATGGCTTGCTAGTTCATGCACATGCTATTAAGCAAGGTTTTGAATCCAGTATATATGTTGCAAGTTCTTTGATCAATATGTATGGTAAGTGTCAAATGCCAGATGATGCACGCCAAGTATTTGATGCTATATCTCAGAAAAATATGATTGTCTGGAATGCCATGCTTGGAGTTTATTCACAGAATGGCTTTTTAAGTAATGTCATGGAGTTGTTTTTGGATATGATATCTTGTGGCATTCACCCAGATGAATTTACCTACACTAGCATTTTGAGCACATGCGCATGCTTTGAATATCTAGAAGTTGGCCGCCAGTTGCATTCAGCTATTATCAAGAAAAGATTTACCTCCAATTTATTTGTCAACAATGCGTTGATAGATATGTATGCTAAGGCTGGGGCTTTGAAGGAAGCCGGCAAACACTTTGAGCACATGACATACCGAGATCATATTTCCTGGAATGCCATTATTGTTGGATATGTGCAAGAAGAAGTGGAAGCTGGTGCTTTTAGTTTGTTTCGGAGAATGATTTTAGATGGTATTGTACCTGACGAGGTATCTTTGGCCAGTATACTTAGTGCTTGTGGAAATATTAAGGTACTAGAAGCAGGACAGCAGTTCCATTGCCTGTCAGTTAAGTTGGGTCTTGAAACAAACCTTTTTGCTGGAAGTTCTCTTATTGACATGTATTCCAAGTGCGGGGATATCAAAGATGCACATAAAACTTATTCTAGCATGCCTGAGCGGAGTGTGGTCTCTGTGAATGCTCTGATTGCAGGATATGCTCTAAAAAACACAAAAGAATCTATTAATCTTCTTCATGAGATGCAGATATTGGGACTGAAGCCATCTGAGATTACATTTGCAAGCCTCATAGATGTTTGTAAGGGTTCTGCCAAGGTAATTTTAGGCTTGCAGATCCATTGTGCTATAGTGAAGAGGGGTCTTTTATGTGGTAGTGAATTCTTAGGGACCTCTTTGTTGGGCATGTATATGGACTCACAAAGGCTTGCAGATGCAAACATTCTTTTCTCGGAGTTTTCTAGCCTTAAAAGCATTGTAATGTGGACCGCTTTAATTTCAGGACATATTCAAAATGAGTGCAGTGATGTGGCCTTAAACTTGTATCGAGAAATGCGTGACAACAATATCTCACCTGACCAAGCAACATTTGTTACTGTTCTTCAAGCTTGTGCTCTCTTATCCTCGTTGCATGATGGTAGAGAGATACATTCTCTAATCTTCCATACTGGTTTTGACTTGGATGAGTTAACCAGCAGTGCCCTTGTAGACATGTATGCAAAATGTGGGGATGTAAAAAGTTCTGTTCAAGTTTTTGAAGAATTGGCTACTAAAAAGGATGTGATTTCTTGGAATTCAATGATAGTTGGATTTGCCAAAAACGGTTATGCAAAATGCGCCCTGAAGGTCTTCGATGAAATGACTCAATCATGCATTACCccagatgatgtcacatttcttggagtgcttaccgcttgtagccatgcaggAGACACAAATGAAAGAGCACCCCCTGGTGTTGACACCAGAATCCATTGGGAAAACGAAGATGAAGGTTGGATCGGAGGTACCAATACCAAACACCAACAAACCCACAAACCCAATAACATGTTACAGGCTGATGACTTTCCAGATCTCCTCTCTGCTTCTTTAGGTTCTCATTACGAATTCTTAGGCGTATCACCAGATGCGGATTTAGAAGAAATTAAAGTTGCTTATCGGAAACTGTCAAAGGAGTATCATCCCGACACAACTTCCCTCCCTCTCAAAACTGCCTCAGAAAAGTTCATGAAATTAAGAGAGGTTTACAACGTTCTTAGCAATGAAGAGAGTCGGAAATTCTATGACTGGACCCTTGCTCAAGAGGTTGCAAGCCGCCACGCAGAGAAGATGAAAATGAAATTAGAGGATCCTCGCGAGCAACAACTCAAGAACTGGGAACCTGTTCCAGACATGGTTGACCGCCTTGGTGGAAGGAATATGAAGCTTAGTGATCAGGCAGTTTCTGCCATCACTATTGATCTTTTCATCATTGTTTTTGCCATATGTTGTATCATATATGTAATTTTCTTTAAAGAACCCTATTACTACTAA 2817 0.4136 MRVAAGVKCLLRVRQWNWRVQGTKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKNTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGDTNERAPPGVDTRIHWENEDEGWIGGTNTKHQQTHKPNNMLQADDFPDLLSASLGSHYEFLGVSPDADLEEIKVAYRKLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSNEESRKFYDWTLAQEVASRHAEKMKMKLEDPREQQLKNWEPVPDMVDRLGGRNMKLSDQAVSAITIDLFIIVFAICCIIYVIFFKEPYYY 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00010 938 Gene3D DnaJ domain 788 880 IPR036869 -
Gma12g00010 938 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Gma12g00010 938 Pfam DnaJ domain 795 857 IPR001623 -
Gma12g00010 938 SUPERFAMILY Chaperone J-domain 793 861 IPR036869 -
Gma12g00010 938 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Gma12g00010 938 PRINTS DnaJ domain signature 796 814 IPR001623 -
Gma12g00010 938 PRINTS DnaJ domain signature 832 852 IPR001623 -
Gma12g00010 938 PRINTS DnaJ domain signature 814 829 IPR001623 -
Gma12g00010 938 PANTHER OSJNBB0070J16.5 PROTEIN 163 382 - -
Gma12g00010 938 PANTHER OSJNBB0070J16.5 PROTEIN 380 482 - -
Gma12g00010 938 PANTHER OS07G0578800 PROTEIN-RELATED 652 741 IPR045215 GO:0003723|GO:0009451
Gma12g00010 938 PANTHER OS07G0578800 PROTEIN-RELATED 115 165 IPR045215 GO:0003723|GO:0009451
Gma12g00010 938 PANTHER OS07G0578800 PROTEIN-RELATED 482 553 IPR045215 GO:0003723|GO:0009451
Gma12g00010 938 PANTHER OS07G0578800 PROTEIN-RELATED 556 648 IPR045215 GO:0003723|GO:0009451
Gma12g00010 938 ProSitePatterns Nt-dnaJ domain signature. 837 856 IPR018253 -
Gma12g00010 938 PANTHER OSJNBB0070J16.5 PROTEIN 115 165 - -
Gma12g00010 938 PANTHER OSJNBB0070J16.5 PROTEIN 482 553 - -
Gma12g00010 938 PANTHER OSJNBB0070J16.5 PROTEIN 556 648 - -
Gma12g00010 938 Gene3D Tetratricopeptide repeat domain 335 433 IPR011990 GO:0005515
Gma12g00010 938 Gene3D Tetratricopeptide repeat domain 534 636 IPR011990 GO:0005515
Gma12g00010 938 Gene3D Tetratricopeptide repeat domain 434 533 IPR011990 GO:0005515
Gma12g00010 938 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Gma12g00010 938 TIGRFAM PPR: pentatricopeptide repeat domain 690 723 IPR002885 -
Gma12g00010 938 TIGRFAM PPR: pentatricopeptide repeat domain 116 143 IPR002885 -
Gma12g00010 938 TIGRFAM PPR: pentatricopeptide repeat domain 588 621 IPR002885 -
Gma12g00010 938 TIGRFAM PPR: pentatricopeptide repeat domain 183 214 IPR002885 -
Gma12g00010 938 TIGRFAM PPR: pentatricopeptide repeat domain 385 419 IPR002885 -
Gma12g00010 938 CDD DnaJ 795 849 IPR001623 -
Gma12g00010 938 PANTHER OSJNBB0070J16.5 PROTEIN 23 104 - -
Gma12g00010 938 Pfam PPR repeat 385 415 IPR002885 -
Gma12g00010 938 Pfam PPR repeat 154 175 IPR002885 -
Gma12g00010 938 Pfam PPR repeat 458 484 IPR002885 -
Gma12g00010 938 Pfam PPR repeat 116 143 IPR002885 -
Gma12g00010 938 Pfam PPR repeat 357 380 IPR002885 -
Gma12g00010 938 Pfam PPR repeat 661 683 IPR002885 -
Gma12g00010 938 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 688 722 IPR002885 -
Gma12g00010 938 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Gma12g00010 938 Gene3D Tetratricopeptide repeat domain 182 334 IPR011990 GO:0005515
Gma12g00010 938 Gene3D Tetratricopeptide repeat domain 23 181 IPR011990 GO:0005515
Gma12g00010 938 ProSiteProfiles dnaJ domain profile. 794 860 IPR001623 -
Gma12g00010 938 SMART dnaj_3 793 852 IPR001623 -
Gma12g00010 938 Pfam PPR repeat family 180 227 IPR002885 -
Gma12g00010 938 Pfam PPR repeat family 687 735 IPR002885 -
Gma12g00010 938 Pfam PPR repeat family 585 633 IPR002885 -
Gma12g00010 938 Pfam PPR repeat family 281 329 IPR002885 -
Gma12g00010 938 Gene3D Tetratricopeptide repeat domain 637 778 IPR011990 GO:0005515
Gma12g00010 938 PANTHER OS07G0578800 PROTEIN-RELATED 23 104 IPR045215 GO:0003723|GO:0009451
Gma12g00010 938 PANTHER OS07G0578800 PROTEIN-RELATED 163 382 IPR045215 GO:0003723|GO:0009451
Gma12g00010 938 PANTHER OS07G0578800 PROTEIN-RELATED 380 482 IPR045215 GO:0003723|GO:0009451
Gma12g00010 938 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Gma12g00010 938 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Gma12g00010 938 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Gma12g00010 938 PANTHER OSJNBB0070J16.5 PROTEIN 652 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00010 Gma-Chr12 73963 82425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00010 188 742 Glycoside Hydrolase AT3G49170 30.282 4.15e-82 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00010 - - gmx:100800995 1457.97