Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00009 ATGAGTGAGAGTAACGGGAACAGCAGGAGGCGAAATGTTGAAGATCAAGATCTGGGACTGTACTTCTTGGAGGCGTGCAGGGGTAGGGAGATGAAAGAGGAAGAGGAAGAGGAAGAGGCACCCAGGGAGCTCAACACCATTAACAGCTCTGGTGGTTTCGTCGTGGTTTCCACGGACAAGTTGTCGGTAAAGTACACCAGCGTCAACCTTCACGGCCACGACGTCGGTGTCATTCAGGCCAACAAGCCTGCTCCTACCAAGCGCCTCATGTACTATTTCGAGATTCATGTCAAGGATGCCGGCGTTAAGGGCCAGATAGCCATTGGATTCACCTCCGAGACCTTCAAGATGCGAAGACAACCAGGGTGGGAGGCCAATAGCTGCGGCTATCACGGCGATGATGGTCTGCTCTACCGTGGACATGGCAAGGGGGGAGAGCCGTTTGGCCCAACCTATACATCCGGAGACGTAGTTGGTGCCGGAATTAACTATGCTGCCCAGGAATTTTTTTTCACTAAGAATGGCCATGTTGTCGGCTCTGTTTACAAAGACATGAAAGGCCCCCTTTTTCCAACCGTTGCTGTTCACAGCCAAAACGAAGAGGTGCATGTCAACTTTGGGCAGAAACCATTTACTTTTGACCTAAAGGAATTTGAAACACAAGAAAGAATGAAGCAGCAACTGAAAATAGAGGAAATTTCTGTGCCACCAAATGTCAGTTACGGAATTGTCCGCTCCTACCTGCTACACTATGGCTATGAAGATACATTGAATTCATTTGATGTGGCTAGTAAAAGTACTGTTCCTCCTATATACATAGCTCAAGAAAGTGGAATTGATGAGCAGGAAATAACATATGCCTTGAATCATAGAAAGACTTTACGACAGCTAATCAGGAATGGGGACATTGATGTTGCATTTGGTAAATTACGTGAATGGTATCCACAGATTGTTGAGGACAATACATCAGCTACATGTTTTCTGCTTCATTGTCAAAAATTTATCGAATTAGTTCGGGTTGGAGCACTTGAAGAGGCTGTCAAATATGGAAGGATGGAATTGTCAAGTTTTTATGACTTGCCTGTGTTTAAGGATTTAGTTCAGGACTGTGTTGCTTTGCTGGCATATGAACGGCCTCTGGAATCCTCCGTAGGTTATCTTCTAAAAGACTCTCAGCGTGAAGTTGTAGCTGACACAGTAAATGCCATGATATTGTCCACAAATCTTAATATGAAAGATTCAAAACATTGTTTGCACTCTTATCTTGAGAGGTTACTTAGACAGCTTACTGCTTGCTGCTTAGTGAGGCGATCCCTGAATGGAGAGCAGGGAGAAGCTTTCCAACTTCAGAGAGTGCTTAGCAGTAGTAGAAGAGGCTAG 1380 0.4522 MSESNGNSRRRNVEDQDLGLYFLEACRGREMKEEEEEEEAPRELNTINSSGGFVVVSTDKLSVKYTSVNLHGHDVGVIQANKPAPTKRLMYYFEIHVKDAGVKGQIAIGFTSETFKMRRQPGWEANSCGYHGDDGLLYRGHGKGGEPFGPTYTSGDVVGAGINYAAQEFFFTKNGHVVGSVYKDMKGPLFPTVAVHSQNEEVHVNFGQKPFTFDLKEFETQERMKQQLKIEEISVPPNVSYGIVRSYLLHYGYEDTLNSFDVASKSTVPPIYIAQESGIDEQEITYALNHRKTLRQLIRNGDIDVAFGKLREWYPQIVEDNTSATCFLLHCQKFIELVRVGALEEAVKYGRMELSSFYDLPVFKDLVQDCVALLAYERPLESSVGYLLKDSQREVVADTVNAMILSTNLNMKDSKHCLHSYLERLLRQLTACCLVRRSLNGEQGEAFQLQRVLSSSRRG 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00009 459 PANTHER RAN BINDING PROTEIN 9-RELATED 26 456 - -
Gma12g00009 459 Gene3D - 24 227 IPR043136 -
Gma12g00009 459 CDD SPRY_RanBP_like 76 207 IPR044736 -
Gma12g00009 459 Pfam SPRY domain 91 208 IPR003877 GO:0005515
Gma12g00009 459 SMART SPRY_3 88 210 IPR003877 GO:0005515
Gma12g00009 459 SMART ctlh 287 345 IPR006595 -
Gma12g00009 459 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 287 345 IPR006595 -
Gma12g00009 459 ProSiteProfiles B30.2/SPRY domain profile. 21 211 IPR001870 -
Gma12g00009 459 Pfam CTLH/CRA C-terminal to LisH motif domain 289 431 IPR024964 -
Gma12g00009 459 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 213 IPR013320 -
Gma12g00009 459 SMART toby_final6 341 442 IPR013144 -
Gma12g00009 459 PANTHER RAN-BINDING PROTEIN M HOMOLOG 26 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00009 Gma-Chr12 62654 71844 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00009 K23334 - gmx:100797084 894.419