Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02573 ATGTGCACGGTGGTTTCAAGTTCAGTCCTTGTGGGATGGCTTTCTTCTTGTTCTAAAACGAAAGGGAGCGTTGGCAATGGCATAAGCCATTTAAGCCCTGCCACTCGTGCTATATCCGTACTAGCCACGGCTATGGCTAAAGATGTGTGGACCCGAACATCATCTTCCAACACCAGTTGGCAACGTAGTAGTAGTAGTAGTAGAAGGCAGCAGCAGTACTTGGACCGCAGCGTGGACATGGAAGTGCTATTAGCGGCAATTGGACAGACCCAGAACGAGGATGAACTGTATGCGGTTATGTCTCCCTACAACGGGAGGCAGTTATCCATGCGCTTCATGGTTTCCCTGCTATCCCGCGAGCCTGATTGGCAACGCGCTCTTGCCCTTCTCGATTGGATCAACGACAAGGCCCTCTATCGTCCCTCCCTCTTCGCCTAcaacgtccttctccgcaacgtccttctccgcaacgtccttcGGGCCAAGCAGTGGCACCTCGCACACGGCCTGTTCGATGAAATGCGCCAAAAGGGCCTCTCCCCCGATAGGTACACTTACTCCACCCTAATTACTTGTTTCGGCAAACACGGCTTGTTTGATTCTTCCCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTCTCCGGCGACCTCGTTCTCTACAGTAACTTGATTGACCTTGCCCGCAAGTTGTCCGATTATTCCAAGGCCATTTCTATCTTCTCCAGATTGAAAGCCTCCACTATTACCCCCGACCTTATTGCTTATAACTCCATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGTGAGGCTCGCCTTCTTCTTCAAGAGATGAGAGACAATGCCGTTCAACCCGACACCGTCAGCTATTCCACCCTTCTTGCCATCTACGTTGACAACCAAAAGTTTGTTGAAGCACTTTCTCTATTCTCCGAAATGAATGAAGCTAAATGCCCTCTTGATCTCACCACTTGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGCCCAAGGAAGCCGACCGCCTCTTCTGGAGCATGAGGAAAATGGGGATTCAACCCAACGTCATTAGCTATAATACGCTCTTGAGGGTTTATGGAGAGGCTGACCTATTTGGGGAAGCCATCCATCTATTCCGTTTGATGCAAAGTAAGGATGTACAACAAAATGTTGTCACCTACAACACTATGATTAATATTTATGGCAAGACTCTCGAGCACGAGAAGGCTACAAATCTCATTCAAGAAATGAATAAAAGGGGTATTGAACCCAATGCCATCACTTATTCAACCATAATATCTATATGGGAGAAGGCAGGGAAACTGGACCGTGCTGCCATCTTGTTTCAGAAATTAAGGAGTTCTGGAGTTCGAATTGATGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGATGGGTTTAGTTGCTCATGCAAAGCGTCTACTTCATGAGCTCAAGCGACCGGACAACATTCCCAGGGACACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTCCGGCAGGCTTTTGATGCTCGAGAGGTCAAAGATATATCTGTGTTTGGTTGCATGATTAATCTTTTCTCTAAGAACAAAAAGTATGCCAATGTAGTTGAAGTGTTTGAGAAGATGAGAGAGGTGGGATATTTTCCTGATTCTGATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCGGATGCTTTATATAGACAGATGCATGAAGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAAGATTTCGTGATGGTAGAATCATTGTTTGAGAAGCTGGATTCCAATCCTAATATCAACAAGAAAGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGAGAGCAGATAGACTTAATGATGCATCCCGAATCATGAATAGGATGAATAAAAAAGCAAACAGAATTCATGATCATGCTTAG 2016 0.4435 MCTVVSSSVLVGWLSSCSKTKGSVGNGISHLSPATRAISVLATAMAKDVWTRTSSSNTSWQRSSSSSRRQQQYLDRSVDMEVLLAAIGQTQNEDELYAVMSPYNGRQLSMRFMVSLLSREPDWQRALALLDWINDKALYRPSLFAYNVLLRNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERMGLVAHAKRLLHELKRPDNIPRDTAIAILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFEKLDSNPNINKKELHLVVASIYERADRLNDASRIMNRMNKKANRIHDHA 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02573 671 Gene3D Tetratricopeptide repeat domain 420 492 IPR011990 GO:0005515
Gma11g02573 671 Gene3D Tetratricopeptide repeat domain 347 419 IPR011990 GO:0005515
Gma11g02573 671 Gene3D Tetratricopeptide repeat domain 231 338 IPR011990 GO:0005515
Gma11g02573 671 Gene3D Tetratricopeptide repeat domain 90 230 IPR011990 GO:0005515
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Gma11g02573 671 Pfam PPR repeat 464 491 IPR002885 -
Gma11g02573 671 Pfam PPR repeat 531 559 IPR002885 -
Gma11g02573 671 Pfam PPR repeat 570 595 IPR002885 -
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Gma11g02573 671 PANTHER OS03G0856100 PROTEIN 38 664 - -
Gma11g02573 671 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 38 664 - -
Gma11g02573 671 SUPERFAMILY HCP-like 205 415 - -
Gma11g02573 671 Pfam PPR repeat family 392 435 IPR002885 -
Gma11g02573 671 Pfam PPR repeat family 152 193 IPR002885 -
Gma11g02573 671 Pfam PPR repeat family 251 295 IPR002885 -
Gma11g02573 671 Pfam PPR repeat family 322 366 IPR002885 -
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Gma11g02573 671 TIGRFAM PPR: pentatricopeptide repeat domain 570 599 IPR002885 -
Gma11g02573 671 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Gma11g02573 671 TIGRFAM PPR: pentatricopeptide repeat domain 531 563 IPR002885 -
Gma11g02573 671 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Gma11g02573 671 TIGRFAM PPR: pentatricopeptide repeat domain 152 182 IPR002885 -
Gma11g02573 671 TIGRFAM PPR: pentatricopeptide repeat domain 359 391 IPR002885 -
Gma11g02573 671 TIGRFAM PPR: pentatricopeptide repeat domain 394 428 IPR002885 -
Gma11g02573 671 TIGRFAM PPR: pentatricopeptide repeat domain 255 288 IPR002885 -
Gma11g02573 671 TIGRFAM PPR: pentatricopeptide repeat domain 184 217 IPR002885 -
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Gma11g02573 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Gma11g02573 671 Gene3D Tetratricopeptide repeat domain 493 671 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02573 Gma-Chr11 40719654 40721669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02573 170 625 Glycosyltransferase AT1G05670 22.174 1.73e-34 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02573 - - gmx:100784025 1258.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00010 18 102592 104693 Gma11g02573 11 40719654 40721669 GST