Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02552 ATGTCACTCGCTCAGTCTCTCCAGTCTCAACTGTGCTCCGCGGCACGGCAGAGTCCATTGCTGGCGAAGAAGCTTCACGCACAAATCATAAAAGCTGGTCTCAACCTACACGAACCCATCCCCAACACTCTCTTAAACGCATACGGCAAATGCGGTCTTATCCAAGACGCACTCCAACTGTTCGACGCATTGCCCCGCCGAGACCCCGTCGCATGGGCCTCCCTCCTCACCGCCTGCAACCTCTCCAACCGCCCTCACCGCGCCCTCTCCATCTCCCGCTCCCTTCTCTCCACCGGCTTCCACCCCGACCACTTCGTCTTCGCCTCCCTCGTCAAGGCTTGTGCTAACTTGGGTGTTCTTCACGTCAAACAAGGGAAACAAGTCCATGCTCGCTTCTTCCTATCACCCTTCTCCGATGACGACGTTGTCAAGTCTTCTTTGATTGATATGTACGCGAAATTCGGGTTGCCCGATTACGGACGTGCCGTTTTCGACTCCATTTCTTCCTTGAATTCAATTTCTTGGACTACCATGATATCCGGGTATGCGCGAAGTGGGCGAAAGTTTGAGGCTTTTCGGCTGTTTCGTCAAACGCCGTATCGGAATTTGTTTGCGTGGACTGCTTTGATTTCTGGGTTGGTGCAGAGTGGGAATGGAGTTGATGCGTTCCACTTGTTTGTTGAAATGCGGCATGAAGGGATTAGTGTAACAGACCCGTTGGTTCTTTCTAGTGTGGTTGGTGCTTGTGCTAATTTAGCTCTCTGGGAGCTAGGGAAACAGATGCACGGTCAAACATCAAAACATAGAAAACGACAGAAGCTGGAGTTTGTTGCTTCCGGATTAACTTGGATCGATTCTCATCGCGTAAAACAAAACTTGCTGTTAATGTTAAGCTGA 897 0.5084 MSLAQSLQSQLCSAARQSPLLAKKLHAQIIKAGLNLHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGQTSKHRKRQKLEFVASGLTWIDSHRVKQNLLLMLS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02552 298 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 8 264 - -
Gma11g02552 298 TIGRFAM PPR: pentatricopeptide repeat domain 42 64 IPR002885 -
Gma11g02552 298 TIGRFAM PPR: pentatricopeptide repeat domain 173 197 IPR002885 -
Gma11g02552 298 TIGRFAM PPR: pentatricopeptide repeat domain 205 237 IPR002885 -
Gma11g02552 298 Gene3D Tetratricopeptide repeat domain 123 273 IPR011990 GO:0005515
Gma11g02552 298 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Gma11g02552 298 Pfam PPR repeat 145 167 IPR002885 -
Gma11g02552 298 Pfam PPR repeat 173 197 IPR002885 -
Gma11g02552 298 Pfam PPR repeat 205 234 IPR002885 -
Gma11g02552 298 Pfam PPR repeat 42 66 IPR002885 -
Gma11g02552 298 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Gma11g02552 298 Gene3D Tetratricopeptide repeat domain 3 121 IPR011990 GO:0005515
Gma11g02552 298 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 201 IPR002885 -
Gma11g02552 298 PANTHER OS11G0661000 PROTEIN 8 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02552 Gma-Chr11 40586918 40588949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02552 55 267 Glycoside Hydrolase AT3G49170 30.556 1.30e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02552 - - gmx:100782048 513.842