Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02542 ATGAAGCACTTCATGCTCCCAAGAAACCCTCTCAGGGACGCAGCAGAGCTTCCTTCTTCTCCAAGTCCCACCCCAACTACTAGCTCCGCCAAACCCCGTTCCTCTTCTCGCAAACACAAACCCTCCAAAGAGAACGACCCTCCCTCCGATCCCAATCTCGTTACTCCTTCCCCTGCCAAATTGAAGAGCCCCTTGCCCCCGAGACCCCCTTCTTCCAATCCTCTCAAGCGCAAGCTCACCGCCGCCGATGCCCTAACCGACAATTCCCTCCCCGCACCCTCCGATTCCGGCGTCAAGGTTATTGTCAGGATGAGGCCGCTGTCTCCGGACAAGGACAATGTAGATCCCACAGTTCAGAAGGTTTCCAATGATTCCCTGTCCATTAATGGACACAATTTCACCTTTGATTCCCTGGATATTTTCGAACACATTGGGGTGCCTTTGGTAGAGCATTGTTTGGCCGGCTTCAATAGTTCAGTTTTTGCTTATGGACAGACGGGGAGCGGGAAGACTTATACAATGTGGGGTCCTGCCAATTGTTTGTCGGAGGAAAATGATCAGCAAGGACTTGCCCCCCGTGTTTTTCAGCGACTCTTTGCTCGCATAAGTGAAGAGCAAACTAAGCATTCTGGCAACCAACTCAATTATCAGTGCCACTGCTCTTTTCTTGAGATATACAATGAGCAAATCATGGATCTGTTGGATCCGAATCAGAAAAACCTACAGATTAGAGAAGATGTGAAGTCTGGTGTCTATGTTGAAAATCTTACAGAGGAGGATGTGTCTTCAATTAACGATGTAACTCAGCTTTTAATAAAGGGATTATCGAACAGGAGAACTGGTGCAACCAGTATAAATTCTGAAAGTTCCCGCTCGCATACTGTTTTTATTTGTGTTGTTGAATCTCGATGCAAGAGTGCAGCAGATGGTATGAGCAGATTTAAAACAAGTAGGATCAATCTTGTTGATCTAGCTGGGTCAGAACGGCAAAAATCAACAGGTGCTGCAGGAGAGCGATTGAAGGAAGCTGGCAATATTAATAGATCACTCTCACAGCTTGGGAATCTGATAAATATTCTTGCGGAAGTCTCCCAGACAGGAAAGCAGCGGCATATACCGTATAGAGATTCTAGGTTGACATTTTTGTTGCAGGAGTCTCTTGGAGGAAATGCAAAATTAGCAATGATTTGTGCTATTTCACCAGCACAAAGTTGTAGGAGTGAAACATTCAGTACACTGAGATTTGCACAACGTGCCAAAGCTATCAAGAACAAGGCAGTTGTTAATGAAGTTATGGAAGATAATGTGAAGCACTTGCGACAAGTGATTCGGCAACTAAGGGATGAGCTTCATCGAATTAAAGCAAATGGTTACAACCCAACGGAGTCAAGTGGAGGTCATTCAGCAGCTTGGATCCGACAAAGCTTGAACTTGTTACAATCCAGCCTCAATCGACCACCACCATTATCCCGTCTCGATGAAGATGGTGATGAGGAGATGGAGATTGATGAGGAAGGTGTTGAGGACCATGATGGAGTTTCCTGCACTGCCAATATGCCGAGTAATTGTAATATTGTAGACAATAATGACAACGAAATGAACACTGATGATCAGGATTTGGCTCAACCTGGTGTGGAGAAAAATATACCTAGTTGCTCTGGCAGTAAAGGTTTGAATGAAGAACCATCCCGTGCAATGGTCCAAAACAGTTTCTCTTGTCCTATTGGTGAATCTGATTCTCCTAGTGCAGCAACAAATTGTGTCTCGCCTGCCGGCCTTAGCATAGTTCAGTGTGATTTATCCCCAATCCTTAAATCCCCAGCTCCTAGTGTTTCACCTAGAATCAGCACCAGCAGGAAAAGTCTGAGGACATCAACAGGGCTGTCTCCTTCTGAGAATGATCTTCATGTTGAAAAAGATTTGGACATGAAAACCATCACTAAGAAAAGCTCAACTTCTGCCTTGTCTAGTCAGACATCTCCAAATTTCCTTAGTAAAACAGAAAATTTAGCAGCAAGCATACGGCATGGTCTTGAAATTATGGATAGTTACAAACGTAATTCAGCTTTGAGGCAGTCACCATATAGGTTTTCATTACAACCAAGAGAGTCTAGATTAATTTTTCCCACTAACAAAGTTGATGTGGGCCTACAGACTTCTCTTGATGATATTGTTGGAGAAGATTCTGTTCTATTCACCTGTAGTAATTGTAAAAACAGAGCTCATCTTGATGCCAATGAGACTGACAATGATTCAAATCTACAGTTGATACCTGTTGATTGTCTTGAGTTTGCTGATAAGCCAAAGAAGCAAGTTATCAAAGCAGTAGAGAAGGTTTTGGCAGGATCTATAAGGAGAGAAATGGCCCTTGAAGAGTTCTGTGCCAAGCAGACTTCTGAGATAATGCAGCTTAATCGCTTGGTGCAACAGTACAAGCATGAGAGGGAATGCAATGCCATAATTGCACAGACAAGGGAAGATAAAATTCTTCGCCTTGAGAGCCTTATGGATGGTGTTTTACCCACTGAAGAGTTCATGGAGGAAGAGCTAGTGGCTCTTACCCATGAACATAAGATTTTAAAGGATAAGTACGAGAATCATCCAGAAGTTTTGAAGATGGAGATAGAGTTGAAAAAAGTGCAAGAGGAACTAGAGAAGTATCAAAATTTCTACAAATTGGGGGAGAGAGAAGTGCTGATGGAAGAGATACAAAGCTTAAGAAGCCAACTTCAATTTTATGTAGACTCTTCATCCACATCAGCAAGGAAGCAATATCCGCTATTGCAATTGACTTACTCGTCTGAGCCCAGTATGGCAGCAACCCTCACTGTCATTCCAGAGTCCACAGAGGAGAGAGAAGAAACAAATGAAACTCTTGCATCATCCAGGAATGATACTGAAGCACAATTTGAACAAGAAAGAATTAAATGGACAGAGGCAGAAAGCAGGTGGATTTCTCTTTCTGAAGAACTGAGAGCTGAGCTTGAGAGTAGCAGGTTGCTAGCTGAAAAGAGGAAGCAGGAATTAGATGCGGAGAGGGAGTGTACTCAGGAGCTTCAGGAAGCCATGCACATGGCTATAGAAGGCCATGCAAGACTTTTAGAGCAATATGCAGATTTGGAAGAGAAACACATCCATTTGCTTGCAAGGCATAGACAGATCCAGGATGGAATTGAGGATGTCAAGAAAGCGGCTTCCAGAGCAGGAGTACGAGGTGCGGAGTCTAAGTTCATAAATGCCCTAGCTGCTGAAATTTCAGCTTTAAAAGCAGAAAGAGAAAAAGAACGGCGAATCTTAAGAGATGAAAATAAAGGGCTTCAGTCTCAGTTGAAGGACACTGCAGAAGCAGTGCAAGCTGCTGGTGAACTGCTTTTGCGGCTTAAAGAGGCTGAGGAAGCTGTCACTACTGCACAGAAACGGGCTATGGATGCAGAACAGGAAGCTGCCAAGGCCTACAAACAAATTGATAAGTTGAAGAATAAACATGAAAAGGAGATTATCACACTAAATGAGCTTCTTTTGGAAGCACGTTTGCCAAAGGAATCTGTACGACCGACTTATGATGACGATGTTGTCATGCCTAGTTATGACGACTCAAAGGAGCCAAAGAGTGTTAATGATCAGTTTGAGCCATTTACTAATAATGCAGAGTATGGTGAGCTCGCCAAAGTAACAGAATCATCGTGGTTCTCTGGTTACGACAGATGGAAAGAGGTGAAGAAGCAGCAGAAGAGAGAGAGAGAGATGGCGCCTCCCATTCCCAAAGTTCTCATGGTCGCAGAGAAGCCCAGCATCGCTCTCTCTATTGCTTCTGTTCTCTCTCACGCTCAGATGTTTACGAGAAGGGGAAGCACTGAAGTTCATGAATTTGATGGCAAGTTTCTTGGATCGCCTGCACATTTTAGAGTAACATCAGTCATTGGGCATGTATTCAGTGTAGATTTTCCTGGTAAATATCAAGATTGGGCAGCCACAGATCCGTTAGATCTTTTTCAAGCTCAGGTTATAAAGAATGAATCAAACCCAAAGGCACATATATGTAGACATTTAAGTCAAGAAGCTCGTGGATGTCGTTATTTGGTATTGTGGTTAGATTGTGATCGTGAAGGAGAAAATATATGTTTTGAGGTTATAAAGTCTACTGGTTTCCATATAAATGATACTTACCGTGCACGGTTCTCTTCTGTTACTGAGAAAGATGTTGTGAAGGCTCTAGACAACCTTGTCAGACCCAACAGAGATGAGGCGCTGGCTGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGAGTTGCCTTTACTCGATTTCAAACGAGTTATTTCCAGGGAAAATATGGGAACCTAGATTCCAGAGTCATCTCCTATGGACCGTGTCAAACTCCTACCTTAGGATTTTGTGTGCAGCGGTATTTACAAATAAACACTTTCAAGCCGGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCAAAATGGCTATGAGATTCAGCTAGAATGGCAACGTGGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAGCTGGTTTCTGAAGATGGACTTTTGGAAGTTACAGAAATATCAGAAAAACAGGAAACCAAAAGTCGCCCTGTTGGTCTAAACACAGTGAATCTTCTGAAGGTTGCTTCAAGTGCTCTTGGATTTGGGCCTCAGATGGCTATGCAACTAGCTGAACGGTTGTATACTCAAGGTTTTATCAGCTATCCACGCACGGAAAGCACAGCATACCCTCCTTCATTTGACTTTCGTGGTGTACTCTCTGCACAAACAAATAATCCAACTTGGGGTAATTATGTACAAGGGCTACTTACCAATGGTTATCAAAAACCTCGATTGGGAACAGATGTAGGTGACCATCCTCCCATTACTCCAATGAGATCAGCAGCAGAAGATATGCTGGGCAATGATGCTTGGAAGCTGTACCAATATATCTGTCAACACTTCATAGGGACAGTGTCTCCGGACTGCAAGTATATAAGGAGAAAGGTTGAATTTTCCATTGGCGGAGAGTCCTTTCATTGTACAGGGCAGCATGTTGTCACCAAAGGATTTACTGCTATTATGCCTTGGTTGGCCATAAATGATAAAAATATCCCATCATTTATAAAAGGGCAGAAAATAGAAGTATCAAAATTGGAGCTCTATGAGGGGAGCACCAGTCCTCCAGATTTCCTTACTGAAAGTGAGCTGATATCCCTGATGGAGAAGAATGGAATAGGAACAGATGCATCGATTCCTGTTCATATTAACAACATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGCAGAAAGCTTGTCCCAACCACATTAGGCATAACATTAGTAAGAGGTTATCAAACAATAGATCCAGATCTCTGCCTGCCTGATATTCGTAGCTTCATTGAGCAACAAATTACTCTTATTGCCAAGGGTCAGGTGGATCATCGTCATGTGGTGCAGCATGTAATCCAACAGTTCACGCAGAAGTTTAGTTACTTTGTCAAAAAGATTGAAGACATGGATGCATTATTTGAAGCGCAGTTTTCTACGCTAACTGATTCAGGGCGTATTCTGAGCAAATGTGGTAAATGCTTGAGATATATGAAGTTCATTTCTACTCAGCCATCACGATTGTATTGTGGTACATGTGAGGAGGTTTACTATCTTCCTCAGAAGGGCACAATAAAGCTGTACAAAGAATTGTCTTGTCCTCTAGACAATTTTGAGCTTTTGATCTGCTCCATGCCTGGCCCAGATGGTAAATCGTTTCCACTATGCCCATACTGCTACATCAATCCCCCATTTGAAGGTATTGAAACACTCATCAACACGGCTAAAACTGGAACTTCTGGCAAGATTGGCAAGGGAGCTGGCATGCCCTGCAACCTATGCCCTCATCCCACTTGCCCAAATTCTCTGGTTTCCCAGGGTGTATGTGCTTGTCCAGAGTGCAGTGGAACACTTGTCTTAGACCCAGTAAGTGCTCCCAGATGGAAACTTTGTTGCAATATGTGCAATTGCCTAGTTTTTCTTGCACAAGGTGCTCATAGAATCTCCACAACTAAAGATCGGTGCCCTGAATGCGACTCCTCAATCATAGAAGTGGACTTCAACAAGAAAACAACTCCTCTGGAAGACGGAGCTACCTTGCACCATGGTTGCATTCTATGTGATGAGTTGCTACATTCCCTTGTGGAAATGAAACATGGTAGAAGTTTCAGGCATATGAGTTCACGAGGAAGAGGTAGAGGAGCAAGAAAAGGTGGAAGGGGCAGAGGACGCGGGGGTGGAAAAATGATGGATCCAAAAATGAGCTTCCGAGATTTCTGA 6336 0.4318 MKHFMLPRNPLRDAAELPSSPSPTPTTSSAKPRSSSRKHKPSKENDPPSDPNLVTPSPAKLKSPLPPRPPSSNPLKRKLTAADALTDNSLPAPSDSGVKVIVRMRPLSPDKDNVDPTVQKVSNDSLSINGHNFTFDSLDIFEHIGVPLVEHCLAGFNSSVFAYGQTGSGKTYTMWGPANCLSEENDQQGLAPRVFQRLFARISEEQTKHSGNQLNYQCHCSFLEIYNEQIMDLLDPNQKNLQIREDVKSGVYVENLTEEDVSSINDVTQLLIKGLSNRRTGATSINSESSRSHTVFICVVESRCKSAADGMSRFKTSRINLVDLAGSERQKSTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICAISPAQSCRSETFSTLRFAQRAKAIKNKAVVNEVMEDNVKHLRQVIRQLRDELHRIKANGYNPTESSGGHSAAWIRQSLNLLQSSLNRPPPLSRLDEDGDEEMEIDEEGVEDHDGVSCTANMPSNCNIVDNNDNEMNTDDQDLAQPGVEKNIPSCSGSKGLNEEPSRAMVQNSFSCPIGESDSPSAATNCVSPAGLSIVQCDLSPILKSPAPSVSPRISTSRKSLRTSTGLSPSENDLHVEKDLDMKTITKKSSTSALSSQTSPNFLSKTENLAASIRHGLEIMDSYKRNSALRQSPYRFSLQPRESRLIFPTNKVDVGLQTSLDDIVGEDSVLFTCSNCKNRAHLDANETDNDSNLQLIPVDCLEFADKPKKQVIKAVEKVLAGSIRREMALEEFCAKQTSEIMQLNRLVQQYKHERECNAIIAQTREDKILRLESLMDGVLPTEEFMEEELVALTHEHKILKDKYENHPEVLKMEIELKKVQEELEKYQNFYKLGEREVLMEEIQSLRSQLQFYVDSSSTSARKQYPLLQLTYSSEPSMAATLTVIPESTEEREETNETLASSRNDTEAQFEQERIKWTEAESRWISLSEELRAELESSRLLAEKRKQELDAERECTQELQEAMHMAIEGHARLLEQYADLEEKHIHLLARHRQIQDGIEDVKKAASRAGVRGAESKFINALAAEISALKAEREKERRILRDENKGLQSQLKDTAEAVQAAGELLLRLKEAEEAVTTAQKRAMDAEQEAAKAYKQIDKLKNKHEKEIITLNELLLEARLPKESVRPTYDDDVVMPSYDDSKEPKSVNDQFEPFTNNAEYGELAKVTESSWFSGYDRWKEVKKQQKREREMAPPIPKVLMVAEKPSIALSIASVLSHAQMFTRRGSTEVHEFDGKFLGSPAHFRVTSVIGHVFSVDFPGKYQDWAATDPLDLFQAQVIKNESNPKAHICRHLSQEARGCRYLVLWLDCDREGENICFEVIKSTGFHINDTYRARFSSVTEKDVVKALDNLVRPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQNGYEIQLEWQRGKLFDINVAMMFQKLVSEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFRGVLSAQTNNPTWGNYVQGLLTNGYQKPRLGTDVGDHPPITPMRSAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYIRRKVEFSIGGESFHCTGQHVVTKGFTAIMPWLAINDKNIPSFIKGQKIEVSKLELYEGSTSPPDFLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQTIDPDLCLPDIRSFIEQQITLIAKGQVDHRHVVQHVIQQFTQKFSYFVKKIEDMDALFEAQFSTLTDSGRILSKCGKCLRYMKFISTQPSRLYCGTCEEVYYLPQKGTIKLYKELSCPLDNFELLICSMPGPDGKSFPLCPYCYINPPFEGIETLINTAKTGTSGKIGKGAGMPCNLCPHPTCPNSLVSQGVCACPECSGTLVLDPVSAPRWKLCCNMCNCLVFLAQGAHRISTTKDRCPECDSSIIEVDFNKKTTPLEDGATLHHGCILCDELLHSLVEMKHGRSFRHMSSRGRGRGARKGGRGRGRGGGKMMDPKMSFRDF 2111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02542 2111 Gene3D Topoisomerase I, domain 2 1418 1832 IPR013824 -
Gma11g02542 2111 Coils Coil 1120 1175 - -
Gma11g02542 2111 Coils Coil 988 1012 - -
Gma11g02542 2111 CDD TOPRIM_TopoIA_TopoIII 1255 1408 IPR034144 -
Gma11g02542 2111 Gene3D Topoisomerase I, domain 3 1477 1730 IPR013825 -
Gma11g02542 2111 SMART topIaneu2 1529 1784 IPR003602 GO:0003677|GO:0003916|GO:0006265
Gma11g02542 2111 MobiDBLite consensus disorder prediction 2076 2095 - -
Gma11g02542 2111 ProSiteProfiles Toprim domain profile. 1255 1395 IPR006171 -
Gma11g02542 2111 CDD TOP1Ac 1414 1832 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gma11g02542 2111 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 1566 1580 IPR023406 GO:0003917
Gma11g02542 2111 Pfam Toprim domain 1256 1395 IPR006171 -
Gma11g02542 2111 Gene3D - 1243 1411 - -
Gma11g02542 2111 Gene3D Topoisomerase I, domain 4 1537 1662 IPR013826 -
Gma11g02542 2111 SMART toprim5 1255 1386 IPR006171 -
Gma11g02542 2111 Coils Coil 843 863 - -
Gma11g02542 2111 SMART topIban2 1387 1483 IPR003601 GO:0003677|GO:0003916|GO:0006265
Gma11g02542 2111 MobiDBLite consensus disorder prediction 610 632 - -
Gma11g02542 2111 MobiDBLite consensus disorder prediction 948 967 - -
Gma11g02542 2111 Coils Coil 1078 1116 - -
Gma11g02542 2111 PANTHER KINESIN-LIKE PROTEIN KIN-12B 64 509 - -
Gma11g02542 2111 Coils Coil 794 814 - -
Gma11g02542 2111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 454 IPR027417 -
Gma11g02542 2111 SMART kinesin_4 95 430 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma11g02542 2111 MobiDBLite consensus disorder prediction 2096 2111 - -
Gma11g02542 2111 MobiDBLite consensus disorder prediction 1 76 - -
Gma11g02542 2111 PANTHER KINESIN-LIKE PROTEIN KIN-12B 544 1235 - -
Gma11g02542 2111 ProSiteProfiles Kinesin motor domain profile. 97 422 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma11g02542 2111 ProSitePatterns Kinesin motor domain signature. 317 328 IPR019821 GO:0003777|GO:0005524|GO:0007018
Gma11g02542 2111 Coils Coil 870 897 - -
Gma11g02542 2111 Pfam DNA topoisomerase 1411 1822 IPR013497 GO:0003677|GO:0003916|GO:0006265
Gma11g02542 2111 SUPERFAMILY Prokaryotic type I DNA topoisomerase 1255 1871 IPR023405 -
Gma11g02542 2111 Coils Coil 429 456 - -
Gma11g02542 2111 MobiDBLite consensus disorder prediction 1186 1205 - -
Gma11g02542 2111 Pfam Kinesin motor domain 134 422 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma11g02542 2111 PRINTS Kinesin heavy chain signature 283 300 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma11g02542 2111 PRINTS Kinesin heavy chain signature 372 393 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma11g02542 2111 PRINTS Kinesin heavy chain signature 318 336 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma11g02542 2111 PRINTS Kinesin heavy chain signature 155 176 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gma11g02542 2111 PANTHER CENTROMERE PROTEIN E 64 509 - -
Gma11g02542 2111 Gene3D Kinesin motor domain 91 455 IPR036961 -
Gma11g02542 2111 MobiDBLite consensus disorder prediction 606 637 - -
Gma11g02542 2111 MobiDBLite consensus disorder prediction 2075 2111 - -
Gma11g02542 2111 MobiDBLite consensus disorder prediction 1186 1211 - -
Gma11g02542 2111 PANTHER CENTROMERE PROTEIN E 544 1235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02542 Gma-Chr11 40502119 40519054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02542 35 454 Miscellaneous Gene Families AT4G39050 35.862 7.25e-59 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02542 K03165 K10400 gmx:100785790 2257.64