Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02397 ATGCAGTGGCGGTTGCTGCTTTTGTTGCTTTTGGAGCTAACGGCTCGCGCAATGCCGTATCCGATCACTTTTTCCGCGCGCCTCGTTCACCGCTTCGCCGACGAAATGAAACCGGTTCGGCCTCCGACCGGCTACTGGCCGGACCAGCGGAGCATGCGCTACTACCAGATGCTTCTCACCGGCGACATTCTCCGGCGCAAGATCAAAGTCGGAGGCACACGCTACCAGCTACTGTTTCCTTCTCACGGCAGCAAAACGATGTCGCTCGGCAACGACTTCGGCTGGTTACATTACACGTGGATTGATATAGGAACACCGAGTACTTCGTTTCTCGTGGCGTTGGACGCAGGGAGTGATCTTCTTTGGATTCCGTGTGATTGCGTACAGTGCGCTCCATTGTCATCGAGCTACTATTCCAATCTGGATAGAGACCTGAATGAGTATAGTCCGTCTCGGTCGCTATCCAGTAAGCATCTATCTTGCAGTCATCGGTTGTGTGATAAGGGTTCCAATTGTAAAAGTTCCCAGCAGCAGTGTCCATACATGGTCAGTTACTTGTCGGAGAACACGTCGAGTTCTGGATTGTTAGTTGAGGACATACTGCATCTTCAGTCAGGCGGCACTTTATCAAACTCATCTGTTCAGGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGCCTATTAGGTTTGGGGCCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAATCAGGATTAATCCACTATTCTTTTTCATTGTGCTTTAATGAAGATGATTCTGGTAGAATGTTTTTTGGGGACCAGGGACCAACCAGCCAACAGTCTACTTCATTCTTGCCTTTGGATGGATTATATTCAACCTACATTATTGGAGTGGAGTCATGTTGTATTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGCACAGGTGGATAGTGGGACGTCAtttacatttcttcctggccatgtgtatggagcaataactgaggagTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATGTTCCCAGTTCGCAAGACTTGCCAAAAGTTCCCAGCTTTACTCTCATGTTCCAACGCAATAACAGTTTTGTGGTCTATGATCCCGTGTTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATATTGCCAACTGAAGGAGATATGGGAACAATTGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGGAAACAAGAAGCTAGCATGGTCACGCTCAAATTGTCAGGATCTGAGTCTAGGCAAGAGGATGCCCCTTTCTCCAAATGAGACTTCATCAAACCCATTGCCTACAGATGAGCAACAAAGAACGAATGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAACCTTCGGCTGCTTCATCTCGGATGATTTCATCGTGCCGGGGGACTGTGAAATATCGTGTGGAGTATGACATTTAA 1545 0.4557 MQWRLLLLLLLELTARAMPYPITFSARLVHRFADEMKPVRPPTGYWPDQRSMRYYQMLLTGDILRRKIKVGGTRYQLLFPSHGSKTMSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSHRLCDKGSNCKSSQQQCPYMVSYLSENTSSSGLLVEDILHLQSGGTLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLAKSGLIHYSFSLCFNEDDSGRMFFGDQGPTSQQSTSFLPLDGLYSTYIIGVESCCIGNSCLKMTSFKAQVDSGTSFTFLPGHVYGAITEEFDQQVNGSRSSFEGSPWEYCYVPSSQDLPKVPSFTLMFQRNNSFVVYDPVFVFYGNEGVIGFCLAILPTEGDMGTIGQNFMTGYRLVFDRGNKKLAWSRSNCQDLSLGKRMPLSPNETSSNPLPTDEQQRTNGHAVAPAVAGRAPHKPSAASSRMISSCRGTVKYRVEYDI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02397 514 Gene3D Acid Proteases 279 449 IPR021109 -
Gma11g02397 514 MobiDBLite consensus disorder prediction 450 476 - -
Gma11g02397 514 PRINTS Pepsin (A1) aspartic protease family signature 103 123 IPR001461 GO:0004190|GO:0006508
Gma11g02397 514 PRINTS Pepsin (A1) aspartic protease family signature 417 432 IPR001461 GO:0004190|GO:0006508
Gma11g02397 514 PRINTS Pepsin (A1) aspartic protease family signature 321 332 IPR001461 GO:0004190|GO:0006508
Gma11g02397 514 Pfam Xylanase inhibitor C-terminal 319 441 IPR032799 -
Gma11g02397 514 PANTHER ASPARTIC PROTEINASE-LIKE PROTEIN 1 8 461 - -
Gma11g02397 514 PANTHER ASPARTYL PROTEASES 8 461 IPR001461 GO:0004190|GO:0006508
Gma11g02397 514 Pfam Xylanase inhibitor N-terminal 98 279 IPR032861 -
Gma11g02397 514 ProSiteProfiles Peptidase family A1 domain profile. 97 441 IPR033121 -
Gma11g02397 514 SUPERFAMILY Acid proteases 91 446 IPR021109 -
Gma11g02397 514 Gene3D Acid Proteases 84 278 IPR021109 -
Gma11g02397 514 MobiDBLite consensus disorder prediction 450 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02397 Gma-Chr11 39347938 39351478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02397 90 448 Miscellaneous Gene Families AT1G44130 26.823 4.92e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02397 - - gmx:100817311 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00178 18 1459025 1462587 Gma11g02397 11 39347938 39351478 GST