Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02161 ATGAATGCTTTGATGTTTCAGCCCAATACAGCATCTTATTATCCACGTTTGGATGTCCCACAAATCAAGGCATGCAAGAGCATGCGAGAATTGAAGCAAGTGCATGCGTTTTTGGTCAAAACAGGACAAACCCATGACAATGCAATAGCAACAGAGATTCTCAGGCTCAGTGCCACCTCTGATTTTCGTGATATTGGGTATGCCCTCTCGGTGTTCGACCAATTGCCTGAACGAAATTGCTTTGCTTGGAACACTGTCATAAGGGCACTTGCTGAAACCCAAGATAGGCACTTGGATGCCTTGTTGGTTTTCTGTCAAATGCTGTCTGAGGCAACGGTGGAGCCTAACCAGTTCACTTTCCCGTCAGTGTTGAAGGCCTGTGCGGTCATGGCCAGGTTGGCAGAAGGAAAGCAGGTTCATGGGTTGCTTCTTAAGTTTGGATTGGTGGATGATGAGTTTGTTGTCACTAATTTGCTAAGAATGTATGTGATGTGTGGGAGTATGGAGGATGCTAATGTTTTGTTTTATCGGAATGTTGAGGGTGTTGATGATGTGAGGAACTTGGTGAGAGATGAGAGGGGGAGAGAGTTTAATGTGGTTTTATGCAATGTGATGGTTGATGGGTATGCAAGAGTTGGGAACCTTAAGGCTGCTAGGGAGTTGTTTGACAGGATGGCTCAAAGGAGTGTGGTTTCTTGGAATGTGATGATTTCTGGGTATGCTCAAAATGGGTTTTATAAGGAGGCCATTGAGATTTTTCATAGGATGATGCAGATGGGAGACGTGTTGCCGAACCGGGTGACTTTGGTCAGTGTGCTGCCTGCGATTTCGCGTCTTGGAGTGCTGGAGTTGGGGAAATGGGTGCATTTGTACGCGGAGAAGAATAAGATTCGGATTGATGATGTGCTTGGCTCGGCTCTGGTTGATATGTATGCCAAGTGTGGGAGCATAGAGAAGGCAATTCAGGTCTTTGAGAGGCTGCCTCAAAATAATGTTATAACATGGAATGCTGTTATTGGTGGTCTTGCCATGCATGGTAAAGCCAATGATATCTTTAATTATTTGTCGAGGATGGAAAAATGTGGAATATCCCCTAGTGATGTTACTTACATAGCCATCTTGAGTGCTTGTAGCCATGCAGGTTTAGTGGACGAGGGAAGATCATTTTTTAATGACATGGTTAATAGCGTTGGATTAAAGCCTAAAATAGAACACTATGGATGCATGGTTGACCTCCTGGGTCGTGCTGGTTATCTTGAAGAAGCAGAAGAGCTTATATTGAACATGCCAATGAAACCGGATGATGTCATATGGAAGGCCTTGCTTGGTGCTTCTAAGATGCATAAAAATATCAAAATTGGTATGCGTGCTGCAGAGGTTTTAATGCAAATGGCTCCTCATGATAGTGGGGCATATGTGGCTCTCTCCAACATGTATGCCTCATCAGGGAATTGGGATGGAGTTGCGGCGGTGAGGTTAATGATGAAAGATATGGACATAAGGAAAGACCCTGGATGTAGTTGGATTGAAATCGATGGTGTTATTCATGAGTTCCTTGTTGAAGATGATTCCCATTCTAGAGCCAAAGACATACACTCAATGTTGGAGGAAATTTCAAACAAGTTGAGCTTGGAAGGTCACATGCCAGACACCACGCAAGTGTTGCTCAAGATGGATGAGAAACATAAAGAAAGTGTGCTGCACTACCACAGTGAGAAGATTGCTGTTGCTTTTGGCTTAATTAGTACACCTCCAAAGACACCACTTTGCATTGTCAAGAATTTGCGAATTTGTGAAGATTGCCATTCCTCAATGAAATTAATCTCAAAAATGTACGAGCGTAAGATAGTTATTAGAGACAGGAAGCGTTTTCACCATTTTGAACATGGTTCATGTTCTTGTATGGACTACTGGTAG 1917 0.434 MNALMFQPNTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02161 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Gma11g02161 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Gma11g02161 638 Gene3D Tetratricopeptide repeat domain 20 174 IPR011990 GO:0005515
Gma11g02161 638 Gene3D Tetratricopeptide repeat domain 176 280 IPR011990 GO:0005515
Gma11g02161 638 Gene3D Tetratricopeptide repeat domain 281 379 IPR011990 GO:0005515
Gma11g02161 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 401 IPR002885 -
Gma11g02161 638 Pfam PPR repeat 231 260 IPR002885 -
Gma11g02161 638 Pfam PPR repeat 405 430 IPR002885 -
Gma11g02161 638 Pfam PPR repeat 200 228 IPR002885 -
Gma11g02161 638 Gene3D Tetratricopeptide repeat domain 380 573 IPR011990 GO:0005515
Gma11g02161 638 Pfam PPR repeat family 331 378 IPR002885 -
Gma11g02161 638 Pfam E motif 448 510 IPR046848 -
Gma11g02161 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 228 IPR002885 -
Gma11g02161 638 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 632 - -
Gma11g02161 638 PANTHER - 23 632 - -
Gma11g02161 638 TIGRFAM PPR: pentatricopeptide repeat domain 231 261 IPR002885 -
Gma11g02161 638 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Gma11g02161 638 TIGRFAM PPR: pentatricopeptide repeat domain 200 230 IPR002885 -
Gma11g02161 638 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Gma11g02161 638 Pfam DYW family of nucleic acid deaminases 546 638 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02161 Gma-Chr11 36662610 36664526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02161 22 638 Glycoside Hydrolase AT3G49170 33.814 2.01e-127 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02161 - - gmx:100812343 1286.94