Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01224 ATGCGGCATTGGAAACAATTGGGAGAGGTGCTGGTGGCAGCTTCTATCACCAACACGCTATCCCACTCTCACTCTGCAACTATCAACCTCCCTCCTAACCTCGCTCTCGGACTCACCCAACCCCTCATTCTAAAAATCCTCTCAAACCCCGCGCATCACGCATCCCACAAGCTTCGATTCTTCGAGTGGTCTCGCTCCCACCACTGCCCTTCCCCCGCCGCGTACTCCGTCATCCTCCGCACCCTCTCCCGCGAGGGTTTCTACTCCGACATCCCCTCCCTCCTCCATTCCATGACGCAAGCCGGCGTCGTTCTCGATCCCCACTCCCTCAACCACCTCCTCCGCTCCTTCATCATCTCCTCCAACTTCAATTTAGCTCTCCAATTACTAGATTACGTACAACACCTTCACCTCGACCCTAGCCCAATTTACAACTCTCTCCTCGTTGCTCTGCTTGAAAAAAACCAACTCACTCTCGCGTTATCCATCTTCTTCAAGCTCCTTGGTGCTGTTGATTCGAAATCCATCACCGCGTGCAACCAGTTGTTGGTTGCTCTTAGAAAAGCAGACATGAGGGTGGAGTTTGAGCAAGTGTTCCAGAGGTTGAGGGAGAAGAGAGGGTTCTCATTTGACACATGGGGCTACAATGTGTGTATCCACGCCTTTGGTTGTTGGGGTGATTTGGCTACTTGCTTTGCACTTTTTAAGGAGATGAAGGGTGGTAATAAGGGGTTCGTTGCTCCTGATTTGTGCACCTACAACAGCCTCATCACCGCACTTTGCAGGCTTGGCAAGGTGGATGATGCGATCACTGTGTACGAGGAGCTCAATGGCTCAGCCCACCAACCCGATCGCTTCACTTACACCAACCTTATTCAAGCCTGTTCCAAGACTTACAGAATGGAGGATGCCATCAGGATTTTTAACCAGATGCAGAGCAATGGATTCCGCCCGGATACACTTGCTTATAACTCTCTGCTGGATGGACATTTTAAGGCCACAAAGGTTATGGAAGCCTGCCAGCTGTTTGAGAAAATGGTTCAAGAAGGTGTGAGACCGTCATGCTGGACTTATAATATTCTCATTCATGGATTGTTTAGGAATGGCAGGGCGGAAGCTGCTTATACTATGTTTTGTGACCTCAAGAAGAAAGGCCAATTTGTGGATGGGATTACTTACAGCATCGTTGTGTTGCAGCTTTGTAAGGAGGGCCAACTGGAGGAGGCGCTGCAGTTGGTGGAAGAAATGGAAAGCAGAGGTTTTGTTGTTGATCTTGTCACCATAACATCGCTCCTGATTAGCATTCATAGACACGGTCGCTGGGATTGGACAGACCGGCTTATGAAGCATATCAGGGAAGGTGATCTGGCACTTTCCGTTCTCAAGTGGAAAGCTGGAATGGAAGCTTCTATGAAGAACCCGCCCGGCAAGAAAAAGGATTACTCGCCCTTGTTCCCTTCCAAAGGAGATTTTATTGACATCATCAACTTCATGACCTGTGCCCAGGATACCACCAACATTAATGACGGGGAGGAAAATTCCTGCAATGAAATTGACGAGTGGTCATCATCACCGCACATGGATAAATTGGCCAATCAAGTGAGCTCCACTGGCTATTCTTCCCAGATGTTTACTCCTTCTCGTGGACAAAGAGTTCAAGAAAAAGGGCCGGATTCTTTTGATGTTGATATGGTGAATACTTTCTTGTCTATATTTTTGGCCAAGGGAAAGTTGAGCTTGGCTTGCAAATTGTTTGAGATTTTCAGTGATGCAGGTGTGGATCCTGTGAGCTATACTTATAATTCTATCATGAGCTCTTTTGTCAAAAAGGGCTATTTCGCTGAAGCTTGGGCTATTCTAACTGAAATGGGAGAAAAATTTTGCCCCACTGATATAGCCACATACAATATGATAATTCAAGGTTTAGGAAAGATGGGAAGAGCTGATCTAGCCAGTGCTGTTCTTGATAGGCTACTGAGGCAGGGTGGTTATCTTGACATAGTTATGTATAACACTCTCATTAATGCTTTGGGGAAGGCAAGCCGAATTGATGAGGTGAATAAGCTTTTTGAGCAAATGAGGAGCAGTGGGATAAATCCTGATGTTGTCACTTATAATACATTGATTGAAGTTCACAGTAAGGCAGGGCGATTGAAGGATGCTTATAAGTTCTTAAAAATGATGCTGGATGCTGGATGCAGCCCTAACCATGTTACAGACACCACTTTAGATTATCTAGGGAGGGAAATTGATAAATTGAGGTACCAAAGGGCATCGATTTTGAGTGAAAAAGATGATCCTTCTTGA 2307 0.4642 MRHWKQLGEVLVAASITNTLSHSHSATINLPPNLALGLTQPLILKILSNPAHHASHKLRFFEWSRSHHCPSPAAYSVILRTLSREGFYSDIPSLLHSMTQAGVVLDPHSLNHLLRSFIISSNFNLALQLLDYVQHLHLDPSPIYNSLLVALLEKNQLTLALSIFFKLLGAVDSKSITACNQLLVALRKADMRVEFEQVFQRLREKRGFSFDTWGYNVCIHAFGCWGDLATCFALFKEMKGGNKGFVAPDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSKTYRMEDAIRIFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILIHGLFRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLEEALQLVEEMESRGFVVDLVTITSLLISIHRHGRWDWTDRLMKHIREGDLALSVLKWKAGMEASMKNPPGKKKDYSPLFPSKGDFIDIINFMTCAQDTTNINDGEENSCNEIDEWSSSPHMDKLANQVSSTGYSSQMFTPSRGQRVQEKGPDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFAEAWAILTEMGEKFCPTDIATYNMIIQGLGKMGRADLASAVLDRLLRQGGYLDIVMYNTLINALGKASRIDEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGRLKDAYKFLKMMLDAGCSPNHVTDTTLDYLGREIDKLRYQRASILSEKDDPS 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01224 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Gma11g01224 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Gma11g01224 768 Pfam PPR repeat family 318 366 IPR002885 -
Gma11g01224 768 Pfam PPR repeat family 597 643 IPR002885 -
Gma11g01224 768 Pfam PPR repeat family 700 743 IPR002885 -
Gma11g01224 768 Pfam PPR repeat family 248 296 IPR002885 -
Gma11g01224 768 Pfam PPR repeat 385 417 IPR002885 -
Gma11g01224 768 Gene3D Tetratricopeptide repeat domain 296 504 IPR011990 GO:0005515
Gma11g01224 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Gma11g01224 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Gma11g01224 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Gma11g01224 768 Gene3D Tetratricopeptide repeat domain 42 168 IPR011990 GO:0005515
Gma11g01224 768 Gene3D Tetratricopeptide repeat domain 169 295 IPR011990 GO:0005515
Gma11g01224 768 Pfam Pentatricopeptide repeat domain 93 148 IPR002885 -
Gma11g01224 768 PANTHER DEFECTIVE KERNEL35 3 763 - -
Gma11g01224 768 TIGRFAM PPR: pentatricopeptide repeat domain 598 629 IPR002885 -
Gma11g01224 768 TIGRFAM PPR: pentatricopeptide repeat domain 251 276 IPR002885 -
Gma11g01224 768 TIGRFAM PPR: pentatricopeptide repeat domain 286 320 IPR002885 -
Gma11g01224 768 TIGRFAM PPR: pentatricopeptide repeat domain 391 424 IPR002885 -
Gma11g01224 768 TIGRFAM PPR: pentatricopeptide repeat domain 357 385 IPR002885 -
Gma11g01224 768 TIGRFAM PPR: pentatricopeptide repeat domain 634 666 IPR002885 -
Gma11g01224 768 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Gma11g01224 768 TIGRFAM PPR: pentatricopeptide repeat domain 703 736 IPR002885 -
Gma11g01224 768 TIGRFAM PPR: pentatricopeptide repeat domain 668 702 IPR002885 -
Gma11g01224 768 Pfam PPR repeat 215 240 IPR002885 -
Gma11g01224 768 Pfam PPR repeat 668 698 IPR002885 -
Gma11g01224 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 701 735 IPR002885 -
Gma11g01224 768 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 763 - -
Gma11g01224 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Gma11g01224 768 SUPERFAMILY TPR-like 123 731 IPR011990 GO:0005515
Gma11g01224 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 666 700 IPR002885 -
Gma11g01224 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
Gma11g01224 768 Gene3D Tetratricopeptide repeat domain 626 695 IPR011990 GO:0005515
Gma11g01224 768 Gene3D Tetratricopeptide repeat domain 696 748 IPR011990 GO:0005515
Gma11g01224 768 Gene3D Tetratricopeptide repeat domain 521 625 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01224 Gma-Chr11 10439253 10442140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01224 229 743 Glycosyltransferase AT1G05670 22.394 1.34e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01224 - - gmx:100788992 1550.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00523 12 4344987 4345385 Gma11g01224 11 10439253 10442140 GST