Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01118 ATGGCGATTCAAATCCTTAAACAGTTTTCCCAAACTCTGAGACCAAAACCTTGGACTCTGTTCTTCTCTTTCTCTTGTTCAAACGATGCTTCCCAGAGTTTAGTGACAGACGCTGTTTCCATTCTCACCCATCACCGTTCCAAGTCACGTTGGAGCAATCTCCGTTCAGCGTGCCCCAACGGCATCACCCCCGCCGAGTTTTCCGAAATTACCCTCCACATCAAGAACAAACCCCAACTCGCCCTTCGCTTCTTCCTTTGGACCAAATCCAAATCCCTCTGCAACCACAACCTCGCCTCGTACTCCTCCATCATCCACCTCCTCGCACGTGCGCGCCTCTCCTCACACGCTTACGACCTCATCCGAACCGCAATTCGCGCTTCCCACCAAAACGACGAGGAAAATTGTCGTTTCAACTCGCGGCCTCTGAACCTCTTCGAAACCCTCGTTAAAACCTACCGAGACTCCGGGTCCGCTCCCTTCGTCTTCGATTTGTTGATCAAGGCGTGTTTGGATTCCAAAAAACTTGACCCTTCTATTGAGATCGTTCGAATGTTGCTCTCTCGCGGGATCAGCCCTAAAGTTAGCACCTTGAATTCTTTGATTTCTAGGGTTTGTAAAAGTCGAGGGGTGGATGAAGGGTATGCAATTTACCGCGAGTTTTTTCGGTTGGATGAGGAAAACAACGAAATTTCTAAAAGGGGTTCTGGTTTTAGAGTCACCCCTAATGTCCATACTTATAATGATTTGATGCTGTGCTGTTACCAAGATGGTTTGGTGGAAAGGGTGGAGAAGATTTGGATTGAAATGAAGTGTAACTATAAACCCAATGCTTATAGCTATAGTGTGTTGATGGCTACTTTTTGTGATGAAGGGAGAATGGGGGATGCAGAAAAGTTGTGGGAAGAGTTGAGAAGTGAGAAAATTGAGCCTGATGTTGTTAGTTATAATACTATCATTGGTGGGTTTTGTACGATTGGAGATGTTGGAAGGGCTGAGGAATTTTTCAGGGAAATGGCTGTGGCTGGTGTTGGCACCACTGCTTCAACTTATGAGCATCTTGTGAAGGGGTATTGTAATATTGGGGATGTTGATTCGGCTGTTCTTGTTTATAAGGATATGGCTAGGAGCGATTTAAGGCCTGATGCATCAACCCTTGACGTAATGATTAGGTTGCTTTGTGATAAGGGTAGGGTTCGGGAATCTCTGGAGTTTGTGAGGTGTGCAGTTGGTAAATTTGATTTGATTCCAATGGAAAAGAGTTATGAGGCCTTGATAAAGGGGTTGTGTTTTGATGGGAGGATGGAAGAAGCGTTGAAGGTTCAGGCAGAGATGGTTGGAAAAGGTTTCCAACCGAATTCTGAAATATATGGTGCTTTTGTTGATGGATATGTTAGACATGGGAACGAGGAGATGGCAGAAGCTTTGAGGAAAGAAATGCTCCAAAATCAGATGCAGAGCTAA 1464 0.4529 MAIQILKQFSQTLRPKPWTLFFSFSCSNDASQSLVTDAVSILTHHRSKSRWSNLRSACPNGITPAEFSEITLHIKNKPQLALRFFLWTKSKSLCNHNLASYSSIIHLLARARLSSHAYDLIRTAIRASHQNDEENCRFNSRPLNLFETLVKTYRDSGSAPFVFDLLIKACLDSKKLDPSIEIVRMLLSRGISPKVSTLNSLISRVCKSRGVDEGYAIYREFFRLDEENNEISKRGSGFRVTPNVHTYNDLMLCCYQDGLVERVEKIWIEMKCNYKPNAYSYSVLMATFCDEGRMGDAEKLWEELRSEKIEPDVVSYNTIIGGFCTIGDVGRAEEFFREMAVAGVGTTASTYEHLVKGYCNIGDVDSAVLVYKDMARSDLRPDASTLDVMIRLLCDKGRVRESLEFVRCAVGKFDLIPMEKSYEALIKGLCFDGRMEEALKVQAEMVGKGFQPNSEIYGAFVDGYVRHGNEEMAEALRKEMLQNQMQS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01118 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Gma11g01118 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Gma11g01118 487 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 5 485 - -
Gma11g01118 487 Gene3D Tetratricopeptide repeat domain 69 225 IPR011990 GO:0005515
Gma11g01118 487 Gene3D Tetratricopeptide repeat domain 342 407 IPR011990 GO:0005515
Gma11g01118 487 Gene3D Tetratricopeptide repeat domain 233 341 IPR011990 GO:0005515
Gma11g01118 487 Gene3D Tetratricopeptide repeat domain 408 486 IPR011990 GO:0005515
Gma11g01118 487 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 5 485 - -
Gma11g01118 487 TIGRFAM PPR: pentatricopeptide repeat domain 350 383 IPR002885 -
Gma11g01118 487 TIGRFAM PPR: pentatricopeptide repeat domain 421 453 IPR002885 -
Gma11g01118 487 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Gma11g01118 487 TIGRFAM PPR: pentatricopeptide repeat domain 314 343 IPR002885 -
Gma11g01118 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Gma11g01118 487 Pfam PPR repeat 456 483 IPR002885 -
Gma11g01118 487 Pfam PPR repeat 421 450 IPR002885 -
Gma11g01118 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Gma11g01118 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Gma11g01118 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Gma11g01118 487 Pfam PPR repeat 309 339 IPR002885 -
Gma11g01118 487 Pfam PPR repeat family 349 394 IPR002885 -
Gma11g01118 487 Pfam PPR repeat family 242 289 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01118 70 486 Glycosyltransferase AT1G05670 26.105 3.07e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01118 - - gmx:100809831 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01118 11 9441861 9443690 Gma11g01118 11 9441861 9443690 ECH