Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00827 ATGGCATCTGCTAGGGTTTTCGGAGCGATCGCCGGGAGAGCGTTCATGGCCGCGGCGTCGAAGAGTTCGGCCAAGAAGAAACCCGTTCCGTCCGGCGGAGCCGCTGCAAAAGCCGCCGTGAAAAAGCCGGCCGCGCCTAGGACCACCAACTCCGGCATACAGAAGGTGGTTCCGGTGTCTTCCGAGCTCGGAGACTTCCTCGGCGCTCCTCAAGTGTCGCGAACCGACGCCGTCAAGAAAGTCTGGGCCTACATCAAGCTGCAGAATCTTCAGAATCCAGCAAATAAGAAGGAGATCTTTTGTGATGAAAAGCTGAAGACCATTTTTGAGGGGAAAGATAAGGTTGGGTTCACAGAGATTGCTAAATTGCTGTCTAGCCATTTTGTGAAATCTGGCTGA 399 0.5414 MASARVFGAIAGRAFMAAASKSSAKKKPVPSGGAAAKAAVKKPAAPRTTNSGIQKVVPVSSELGDFLGAPQVSRTDAVKKVWAYIKLQNLQNPANKKEIFCDEKLKTIFEGKDKVGFTEIAKLLSSHFVKSG 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00827 132 Gene3D SWIB/MDM2 domain 47 132 IPR036885 -
Gma11g00827 132 SMART swib_2 53 132 IPR019835 -
Gma11g00827 132 ProSiteProfiles SWIB/MDM2 domain profile. 52 130 IPR003121 -
Gma11g00827 132 Pfam SWIB/MDM2 domain 57 128 IPR003121 -
Gma11g00827 132 CDD SWIB-MDM2_like 57 128 - -
Gma11g00827 132 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 2 131 - -
Gma11g00827 132 PANTHER PROTEIN TRI1 2 131 - -
Gma11g00827 132 SUPERFAMILY SWIB/MDM2 domain 48 130 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00827 Gma-Chr11 6961928 6963823 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma11g00827 SWIB 4.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00827 - K15223 gmx:100795307 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00827 11 6961928 6963823 Gma11g00827 11 6961928 6963823 ECH
Gma01g01583 01 51398687 51400577 Gma11g00827 11 6961928 6963823 GST