Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00623 ATGTGGCGGTGCATCGCACGTGGTCTCCGTGGACCTGCTTCCACCAGATCCACCTCCAATCACTCACTTGGATCTCAACTTTCTAGATTCTTCTCTAGTGGGGCGAACTCCTCGTACACCGTGGTGGATCATACTTATGATGCTGTTGTCGTAGGAGCTGGTGGCGCGGGATTGAGAGCTGCTATTGGACTTTCAGAACACGGGTTCAATACTGCTTGTATTACCAAGCTCTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCTTTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGAGACCAGGATGCCATCCAATATATGTGTAGGGAAGCACCAAAAGCAGTCATTGAGCTAGAGAATTACGGATTACCATTTTCCCGAACAGAGGATGGAAAAATATATCAACGTGCATTCGGCGGTCAAAGCTTAAACTATGGAAAAGGTGGTCAAGCTTACCGATGTGCATGTGCTGCTGATCGAACTGGACATGCTTTATTGCACACTCTCTATGGCCAAGCTATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCATTGGATCTTGTAATGAATAGTGATGGCACTTGCCAAGGAGTGATTGCCTTGAATATGGAGGATGGAACACTACATCGTTTCAAAGCTGCTTCAACAATTTTGGCCACAGGGGGTTATGGTAGAGCATACTTCTCTGCAACCTCAGCACATACTTGCACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGGATCCCTCTTGAGGATTTGGAGTTTGTACAATTTCACCCAACAGGTATATATGGAGCAGGTTGCCTTATCACAGAAGGATCTCGTGGTGAAGGTGGAATTCTTAGGAATAGTGAGGGTGAGCGATTTATGGAACGATATGCCCCTACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCAAGAGCAATGACGATGGAGATTCGGGAAGGTCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTGCTCAAAGAGAGACTTCCTGGCATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCAACTGTACATTATAACATGGGCGGTATTCCCACAAACCATTATGGAGAGGTGGTTACCATTAAAGGTGACAATCCAGATGCAGTGGTTCCTGGATTGATGGCTGCCGGGGAAACGGCCTGTGCATCAGTTCATGGTGCCAATAGGCTTGGTGCAAATTCACTTCTGGATATCGTTGTTTTTGGTAGAGCTTGTGCTAATAGAGTTGCAGAAATCCGTAGACCAGGAGAGAAGCAAAAGCCTCTAGAGAAGGATGCTGGTCAGAGAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGTTCATTGCCAACTTCGCAAATTCGGTTGAATATGCAACGAGTAATGCAAACCAATGCTGCTGTGTTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACATGGGAGAGCTTCCATGATGTCCAGGTGAAGGACCGCAGTTTAATCTGGAACTCCGACTTGATTGAGACTATTGAATTGGAAAATCTTTTGATAAATGCATGCATCACAATGTACTCTGCTGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAAGACTTCAAGGTTAGAGATGATGAGAGCTGGATGAAACACACTGTGGGATTCTGGGAGAACGAGAAAGTCCGGTTGGACTACAGGCCGGTGCATTTGAATGTATTGGATGATGAGGTTGAATCATTCCCTCCCAAGGCTCGGGTGTATTAA 1893 0.4548 MWRCIARGLRGPASTRSTSNHSLGSQLSRFFSSGANSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLVMNSDGTCQGVIALNMEDGTLHRFKAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVTIKGDNPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIRRPGEKQKPLEKDAGQRTIAWLDKLRNSNGSLPTSQIRLNMQRVMQTNAAVFRTQETLEEGCQLIDKTWESFHDVQVKDRSLIWNSDLIETIELENLLINACITMYSAEARKESRGAHAREDFKVRDDESWMKHTVGFWENEKVRLDYRPVHLNVLDDEVESFPPKARVY 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00623 630 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 285 388 IPR027477 -
Gma11g00623 630 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 81 90 IPR003952 GO:0016491
Gma11g00623 630 PIRSF SDHA_APRA_LASPO 36 619 - -
Gma11g00623 630 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 630 IPR030664 -
Gma11g00623 630 Pfam Fumarate reductase flavoprotein C-term 499 630 IPR015939 GO:0016491
Gma11g00623 630 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 47 630 IPR014006 GO:0016627|GO:0022900|GO:0050660
Gma11g00623 630 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 44 630 IPR011281 GO:0006099|GO:0016627|GO:0050660
Gma11g00623 630 Gene3D succinate dehydrogenase protein domain 582 630 - -
Gma11g00623 630 Gene3D - 47 454 IPR036188 -
Gma11g00623 630 Gene3D - 470 581 - -
Gma11g00623 630 Pfam FAD binding domain 47 443 IPR003953 -
Gma11g00623 630 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 275 393 IPR027477 -
Gma11g00623 630 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 630 - -
Gma11g00623 630 SUPERFAMILY FAD/NAD(P)-binding domain 38 466 IPR036188 -
Gma11g00623 630 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 489 630 IPR037099 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00623 Gma-Chr11 5176378 5183378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00623 K00234 - gmx:100818379 1260.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00623 11 5176378 5183378 Gma11g00623 11 5176378 5183378 ECH
Gma11g00623 11 5176378 5183378 Gma02g00519 02 5174852 5181638 PCT
Gma02g00519 02 5174852 5181638 Gma11g00623 11 5176378 5183378 PCT