Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00277 ATGGGTAAGGATCTGAGCGATGAGCAAGTGTCTTCAATGAAGGAAGCTTTCTCTTTATTCGACACAGACGGTGACGGTCGGATCGCGCCGTCGGAGCTGGGGATCCTGATGAGGTCTCTGGGAGGGAACCCGACTCAGGCCCAACTCAAAGCCATCGTGGCCGAAGAGAACCTCACGGCTCCCTTCGACTTCCCCCGATTCCTCGATCTTATGGCCAAACACATGAAACCCGAACCCTTCGATCGCCAACTCCGCGACGCCTTCAAGGTCCTCGACAAGGACTCCACCGGCTTCGTCGCCGTCTCCGAGCTCCGCCACATCCTCACCAACATCGGCGAGAAGCTCGAGCCCTCCGAGTTCGACGAGTGGATCCGTGAAGTCGACGTCGGTTCCGACGGCAAGATCCGCTACGAGGATTTCATCTCCAGAATGGTCGCCAAACAAAGTTTATGA 453 0.5695 MGKDLSDEQVSSMKEAFSLFDTDGDGRIAPSELGILMRSLGGNPTQAQLKAIVAEENLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDSTGFVAVSELRHILTNIGEKLEPSEFDEWIREVDVGSDGKIRYEDFISRMVAKQSL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00277 150 SMART efh_1 12 40 IPR002048 GO:0005509
Gma11g00277 150 SMART efh_1 83 111 IPR002048 GO:0005509
Gma11g00277 150 SMART efh_1 119 147 IPR002048 GO:0005509
Gma11g00277 150 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Gma11g00277 150 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Gma11g00277 150 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Gma11g00277 150 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Gma11g00277 150 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Gma11g00277 150 CDD EFh 14 55 IPR002048 GO:0005509
Gma11g00277 150 SUPERFAMILY EF-hand 5 144 IPR011992 -
Gma11g00277 150 PANTHER CALCIUM BINDING PROTEIN 1 147 - -
Gma11g00277 150 PANTHER - 1 147 - -
Gma11g00277 150 Gene3D - 81 145 - -
Gma11g00277 150 Gene3D - 3 80 - -
Gma11g00277 150 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Gma11g00277 150 CDD EFh 83 144 IPR002048 GO:0005509
Gma11g00277 150 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00277 Gma-Chr11 2201244 2203295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00277 1 147 EF-hand Containing Proteins AT1G12310 86.486 5.62e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00277 K13448 - gmx:100527568 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00277 11 2201244 2203295 Gma11g00277 11 2201244 2203295 ECH
Gma01g02128 01 56640717 56644088 Gma11g00277 11 2201244 2203295 GST