Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02228 ATGGTCACACAGCACGGCATCAAATTCGCCGTCCACCTCATCACCAAACACTTCGGCAAAATCGTCGCTAAAGTATGCGAAAACTTATTTATCCATGGGCCCCTCACTTTGGATCAGTTGGTTCGCTACACCGACCTTACTAAGGACCAAGTCCGAAATTCCCTACTTGTTTTAGTTCAACACAATTGTGTCCAAGCATTTGTTTCTGCTCCTCAAGATGATGATGATGATGCAGACAGATTGAGAGTAAGAACTCAGTACCTGGTGTTGTTTGATAGCATACTCCACCGATTGAGGTTTCCCAAATTCTTGGAGATTGTGTCGCGGAAGCTTGATGAAGAATGTGTGAAGCTGCTTGATGGATTGCTTCGAGATGGTAGGCTTACCCTCAAACAAATGGTTGACAGAGAAAGTCAAAGAAAAGAAAATGCTGTGCCTACAAAAGTTGTACGAGAGACACTCTGTAAACTTTTGACGGCTCGATTTGTTGAACGTTGCCCTGCCCCTGAGCCTGTTGTTTCTACCTCATTTAAGGAAACTACTACTAGGAAGCGGGGTGCCAAGTCTGCCAAGATATTTGAAGCACCAGAGACATTAGAACAACGCGTAGTAGATGCAGCAGTGCCTGGGGATGTAATCAGATTTTCACTCGCTGCAGATACCAGATGTAGTGTTGATAGAGAAACAAACTCAGATGATGCTCAAATGATTAGTGTTGAAGAAGAAGTTGCAAAAGAGGGGCAAATTCTTTGGCGTGCAAATTTCGAGGAGTTTATACGTCATCTTAGGCATAAGGTATTGATTGAGAATGTAAGAACTCAGCATGATGATGGAACTGCTACTGTCTTAAGTGCAGTATTGGAGGCAACAAGAAGTGTACAGAAAAAAGTGAAAACGGAAAATTCAGTTCCCTTGTCACTGGATACAATTATCACAGAGGTGATGAAGACTGATACAGGACGAACTATGACTGTAGATCGTATTAGAGCTTCCCTTGTCCAGTTGGGTTGTTCACCGAGCATGATTTTAGAGGAATCATATAGTATTGATTTGAAGAAAATTATTGAACcggctcgaaatgaagagGTTGAGTCAATTGTGTTGAAAAGGTATGGAACGGATGGCTACAGAATTTTCAGGCTACTGGCAAAGGATTGCTGTTTTCACGACACAGATCAGATAGCAGCATCTACTCTGGTTGAGAAAAAAGAAGCTTCAAAGCTGCTATACAAGTTATGGAAGGACAACTACTTGTATATGGAGAAAGTAGGTGCAACGGTGGGAGCCAAGCAAACAACTATTTTGATGTGGAAAGTGAATAAGCCTCTACTTTGGGAATATGTACTGGACGAGATGTACCATGCTGCCTTAAATTTGAGCCTAAGAATGGCTTTTGAGCAGGAAAAGGATGAAGAGCTTTTAAAGGTTCCTAAAGACAAGCGTCAGGGGCCAGGGCCACTGCAGAAGAAATACAAAAAGCTACTAAATGTCTGGTTACTCCTGGGATCATCATTGATGAAACTCGATGATGCTCTGATGCTTTTCCATGACTTTTGA 1557 0.4168 MVTQHGIKFAVHLITKHFGKIVAKVCENLFIHGPLTLDQLVRYTDLTKDQVRNSLLVLVQHNCVQAFVSAPQDDDDDADRLRVRTQYLVLFDSILHRLRFPKFLEIVSRKLDEECVKLLDGLLRDGRLTLKQMVDRESQRKENAVPTKVVRETLCKLLTARFVERCPAPEPVVSTSFKETTTRKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLAADTRCSVDRETNSDDAQMISVEEEVAKEGQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVLEATRSVQKKVKTENSVPLSLDTIITEVMKTDTGRTMTVDRIRASLVQLGCSPSMILEESYSIDLKKIIEPARNEEVESIVLKRYGTDGYRIFRLLAKDCCFHDTDQIAASTLVEKKEASKLLYKLWKDNYLYMEKVGATVGAKQTTILMWKVNKPLLWEYVLDEMYHAALNLSLRMAFEQEKDEELLKVPKDKRQGPGPLQKKYKKLLNVWLLLGSSLMKLDDALMLFHDF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02228 518 Pfam RNA polymerase III subunit RPC82 153 327 IPR008806 GO:0003677|GO:0006351
Gma10g02228 518 Gene3D - 254 348 IPR036388 -
Gma10g02228 518 Gene3D - 91 175 IPR036388 -
Gma10g02228 518 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 518 IPR039748 GO:0003697|GO:0005666
Gma10g02228 518 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 10 68 IPR013197 -
Gma10g02228 518 Gene3D - 2 74 IPR036388 -
Gma10g02228 518 Gene3D - 351 440 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02228 Gma-Chr10 49855223 49864242 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02228 K03023 - gmx:100803947 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02228 10 49855223 49864242 Gma10g02228 10 49855223 49864242 ECH
Gma10g02228 10 49855223 49864242 Gma20g01492 20 42029129 42038564 GST