Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02195 ATGTCTCAGACCATGAAGATGTGTCCACGACTCCGAAATTCCTATGGCATTGGTGTGATCTCCTTAGTTCTGATATTGGTATCAGTAAATGTAAAGGTAGCGAGTGGGGTGTACTATGCCATAAATTGCAGAAAGCATAGTGCAGTTTTGACAGATTTTGGTGGGGTTGGTGATGGCATAACATCCAACACAAAGGCCTTTCAATCTGCAATAAGCAAACTCAGCCAATATGCATCTGATGGAGGTGCAATGCTTGTTGTGCCACCTGGGAAATGGCTAACCGGACCCTTTAATCTCACAAGCCATTTTACTCTTTTTCTCGACTTTGGTGCTGTTATTCTTGCATCTCAGGATGAATCAGAATGGCCCCAACTTCCTGTATTACCTTCATATGGAAGAGGAAGAGATGCTCCCGGAGGAAGGTTTAGCAGTCTAATTTTTGGAACTCACCTCACAGATGTTGTTATAACTGGTAACAATGGTCTAATTGATGGGCAAGGAGCTTATTGGTGGAACAAGTTCCATCAGGGTCAATTGACTCTCACTAGGCCATATTTGATAGAGATCATGTACTCTGATCAAATCCAGATATCATTTCTCACTTTGGTCAACTCGCCTACCTGGTTTGTCCATCCAGTATACAGTAGTAACATAATAATAAAAGGGCTAACCATTAAAGCACCAGTGGACTCTCCCAACACAGATGGGATAAACCCAGATTCATGTTCAAACATTAGGATTGAAGATTGCAACATTACTTCCGGTGATGATTGCATTGCGGTAAAAAGTGGCTGGGATGAGTATGGAATTAGATTTGGAATGCCAACCCAACACTTAATCATTAGGAGGATTACTTGTGTATCCCCTGATAGTGCTATGATTGCTTTAGGGAGTGAAATGTCTGGTGGAATCTATGATGTTAGAGCTGAAGATCTCACTGCCATCAACACTGAAGCAGCAGTTAGAATCAAAACAGCAATTGGTAGAGGTGGATATGTGAAAAACATATTTGTCAAAGGAATGAATCTCAACACCATGAAATATGTATTTTGGATTACTGGCACTTATGGAGACCACCCTGACCCTGGCTATGATCCCAAAGCACTACCTTACATTACCGGGATAAATTATAGAGACGTTGTTGCAACGAATGTCACAAAGTCCGCAAGACTTGAAGGAATTTCCAATGATCCTTTCACAGGAATCTGCATTTCTAATGTGAGTATTCAAGTGAGTGAACAACAGAAGAAGCTTCAATGGAATTGCAGTAACATTTCTGGAGTTACAAGCAATGTCACTCCTTACCCTTGTGCATTGCTGCCAGAGAAAGGGCAATTGGAGTGTCCTTTTCCAACTGACACACTTCCCATTGACAATGTTCAGCTCAAGTCTTGTAACTAA 1401 0.4147 MSQTMKMCPRLRNSYGIGVISLVLILVSVNVKVASGVYYAINCRKHSAVLTDFGGVGDGITSNTKAFQSAISKLSQYASDGGAMLVVPPGKWLTGPFNLTSHFTLFLDFGAVILASQDESEWPQLPVLPSYGRGRDAPGGRFSSLIFGTHLTDVVITGNNGLIDGQGAYWWNKFHQGQLTLTRPYLIEIMYSDQIQISFLTLVNSPTWFVHPVYSSNIIIKGLTIKAPVDSPNTDGINPDSCSNIRIEDCNITSGDDCIAVKSGWDEYGIRFGMPTQHLIIRRITCVSPDSAMIALGSEMSGGIYDVRAEDLTAINTEAAVRIKTAIGRGGYVKNIFVKGMNLNTMKYVFWITGTYGDHPDPGYDPKALPYITGINYRDVVATNVTKSARLEGISNDPFTGICISNVSIQVSEQQKKLQWNCSNISGVTSNVTPYPCALLPEKGQLECPFPTDTLPIDNVQLKSCN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02195 466 SUPERFAMILY Pectin lyase-like 39 441 IPR011050 -
Gma10g02195 466 SMART pbh1 242 263 IPR006626 -
Gma10g02195 466 SMART pbh1 146 172 IPR006626 -
Gma10g02195 466 SMART pbh1 215 241 IPR006626 -
Gma10g02195 466 Pfam Pectate lyase superfamily protein 51 105 IPR024535 -
Gma10g02195 466 Gene3D - 37 435 IPR012334 -
Gma10g02195 466 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 31 466 - -
Gma10g02195 466 PANTHER PECTIN LYASE-RELATED 31 466 - -
Gma10g02195 466 Pfam Glycosyl hydrolases family 28 145 426 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02195 Gma-Chr10 49514417 49517554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02195 24 466 Glycoside Hydrolase AT3G61490 67.325 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02195 - - gmx:100794916 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02195 10 49514417 49517554 Gma10g02195 10 49514417 49517554 ECH