Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02400 ATGGGGGAAGAAGCAAAAAGGTATGCTGTTGTGACAGGAGCAAATAAAGGGATTGGTTTTGGGATGTGTAAGAAATTGGCTTCAAGTGGGATTGTGGTGGTGCTAACAGCTAGAGATGAGAAGAATGGCTTCAAAGCTGTTGAAAAATTGAAAGAGTTTGGTCTCTCGGACCTTCTGGTTTTTCATCAGCTTGATGTGGATGACCCTGCTAGTGTTTCTGCCTTAGCTGATTTCATCAAAACCGAATTCGGGAAACTTGATATCTTGGTAAATAATGCAGCTGTTACTGGAGGCAAATTATTAGATGCTGATGCTTTCCTTAGAAAGAGAAACGGCGAACAAATTGATTGGAATGAAGTAGGATATGAAACTTATGAGTTAGCTGAACAATGTGTGGAAACAAACTTCTATGGTGTGAAAAGGGTAACTGAAGCCCTACTTCCCCTTCTCCAGCTATCCACTTCTCCAAGAATTGTAAATATCTCCTCCAGAGCAGGGCTCTTCAAGAATATACCAAATGAGTGGGCTAGAACAATGTTGAGTGACATTGAAAATCTTACAAGAGAAAAAATAGATGGGGTACTTGAAGAGTTTCAGAAAGATTTCAAAGAGGGGTCATTGGAGATCAAAGGTTGGCCAGCTTTTGCTTCTGCTTATACAATGTCAAAAGCAGCTTTGAATGCATACACAAGGATTATGGCCAAGAAATACCCTCGTTTTCACATAAACTCTGTGTGCCCTGGCTTTGTCAAGACTGATATGAACAACAACACTGGACAATTAAGCATTGATGAAGGGGCTGAAACTCCTGTATTGTTGGCACTGTTGCCAAATGGTGGTCCTTCTGGCTGTTTCTTTCATCAGGTAGTCACAGGAGCAAACAAAGGGATAGGATTTGGAATATGCAAGCAATTGGTTTCTAGTGGCATCACAGTGGTGCTAACAGCAAGGGATGAGAAAAGGGGACTTGAAGCTGTTGAAAAGCTGAAAGAGTTTGGTGTGTCTGATGATCAAGTGGTGTTTCATCAGCTTGATGTGACTGACCCTAAAAGCATTGAATCCCTTGCAAATTTCATCAAAACCCAGTTTGGAAAACTTGATATCTTGGTGAATAATGCAGGAATTCATGGAGCATATGTTGACCGTGATGCTTTAGCTGCTGCTGCTGTGTATGTATTCCAAGCCATATAG 1191 0.4123 MGEEAKRYAVVTGANKGIGFGMCKKLASSGIVVVLTARDEKNGFKAVEKLKEFGLSDLLVFHQLDVDDPASVSALADFIKTEFGKLDILVNNAAVTGGKLLDADAFLRKRNGEQIDWNEVGYETYELAEQCVETNFYGVKRVTEALLPLLQLSTSPRIVNISSRAGLFKNIPNEWARTMLSDIENLTREKIDGVLEEFQKDFKEGSLEIKGWPAFASAYTMSKAALNAYTRIMAKKYPRFHINSVCPGFVKTDMNNNTGQLSIDEGAETPVLLALLPNGGPSGCFFHQVVTGANKGIGFGICKQLVSSGITVVLTARDEKRGLEAVEKLKEFGVSDDQVVFHQLDVTDPKSIESLANFIKTQFGKLDILVNNAGIHGAYVDRDALAAAAVYVFQAI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02400 396 Gene3D - 289 395 - -
Gma09g02400 396 Gene3D - 3 288 - -
Gma09g02400 396 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 206 234 IPR020904 GO:0016491
Gma09g02400 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 278 IPR036291 -
Gma09g02400 396 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Gma09g02400 396 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Gma09g02400 396 PRINTS Glucose/ribitol dehydrogenase family signature 150 166 IPR002347 -
Gma09g02400 396 PRINTS Glucose/ribitol dehydrogenase family signature 219 238 IPR002347 -
Gma09g02400 396 PRINTS Glucose/ribitol dehydrogenase family signature 238 255 IPR002347 -
Gma09g02400 396 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 288 - -
Gma09g02400 396 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 288 386 - -
Gma09g02400 396 Pfam short chain dehydrogenase 289 379 IPR002347 -
Gma09g02400 396 Pfam short chain dehydrogenase 8 169 IPR002347 -
Gma09g02400 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 289 379 IPR036291 -
Gma09g02400 396 Pfam Enoyl-(Acyl carrier protein) reductase 210 259 - -
Gma09g02400 396 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Gma09g02400 396 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 164 IPR002347 -
Gma09g02400 396 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 219 238 IPR002347 -
Gma09g02400 396 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 288 386 - -
Gma09g02400 396 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 1 288 - -
Gma09g02400 396 CDD carb_red_PTCR-like_SDR_c 7 287 IPR045313 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02400 Gma-Chr9 49326630 49332554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02400 289 385 Acyl Lipid Metabolism Gene Families AT1G24360 31.633 3.30e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02400 K15095 - gmx:100789626 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02400 09 49326630 49332554 Gma09g02400 09 49326630 49332554 ECH
Gma09g02400 09 49326630 49332554 Gma07g00675 07 7006319 7009062 PCT