Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01861 ATGGCTCTCTCCGCCACCTTCGTTAAGACAAACCGTTCTATACTACCATTTCACCAAAATTCAAGTCCAAACCATGGTCGCATAAAACAGTTGTGTGTGAGGGCTTCAGCAAGTAGCTTGGATGACGACGAGGACAGAACAGTTGTAAGGAAAGAGAAAGATGGGTGGAAGATCAAATTCTCAAGCCAGAAACCAGCAACTCCCTTGCTGGATACAATCAATTATCCTGCACATATGAAGAATCTATCCTTACAGGATCTTGAACAACTCGCTGCAGAGCTAAGGGCAGACGTTGTACATAGTGTATCAAACACTGGGGGGCATCTTAGCTCAAGCTTGGGAGTAGTGGAATTAACAGTAGCTTTGCATCATGTTTTCAACACACCTGAGGACAAGATTATATGGGATGTAGGGCACCAGGCATACCCACACAAGATTCTCACAGGTAGAAGGTCCAGGATGCACACCATTAGGAAAACCTCGGGACTAGCTGGTTTTCCAAAAAGAGAAGAGAGCGTATATGATGTTTTTGGGACAGGGCATAGTTCTACAAGTATATCTGCCGGTCTTGGCATGGCAGTTGCAAGGGATCTATTGGGAAAGAAAAACAGCATTGTCTCGGTGATTGGAGATGGAGCAATGACTGCTGGCCAGGCTTATGAGGCCATGAATAATGCAGGGTTCCTTGACTCTAACATGATAATTATACTTAATGACAACAAGCAAGTTTCTTTGCCTACTGCTACTATTGATGGTCCTGCAACTCCAGTTGGAGCCCTCAGTAGTGCCTTAAGCAAAATTCAAGCAAGCACCAAATTCCGCAAACTTAGAGAAGCTGCGAAAGGCATCACAAAGCAGATAGGAGGAACAACACACCAACttgcagcaaaggtagatgagtatgcaagaggtatgatcagtggttctggttctacactttttgaggagctcggcttatactacataggccctgtggatggtcacaacattgaagatcttgtcaccattttggaaaaggtgaaagaaatgcctgccccaggtccaacattgattcatgtggtgacagaaaaagggaagggataccccccagcagaagTAGCTGCTGATAAAATGCATGGTGTGGTTAAGTTTGTACCAACATCAGGTCATCAATTGAAACCAAAATCATCCACACTTACATACACTCAGTACTTTGCCGAGTCATTGATAAAAGAAGCAGAAATAGACAATAAGATAGTAGCCATTCACGCAGCAATGGGTGGCGGGACAGGTCTAAATTATTTCCATAAAAGGTTTCCAGATCGCTGCTTTGATGTGGGGATAGCTGAACAACACGCAGTTACATTTGCAGCTGGTTTAGCAGCAGAAGGTCTCAAGCCATTTTGTGCCATTTATTCATCATTTCTGCAACGTGGATATGATCAGGTGGTCCATGATGTAGATCttcagaaactaccagtacgatttgctatggatagagctggtttggttggagcagatggaccaacgcattgtggggcatttgatatcacatacatggcctgcttgcccaatatggtggtcatggctccatcagatgaagctgagctgatgcacatggttgcaacagcagcagccatagatgacagaccAAGCTGCTTTAGATTTCCAAGAGGCAACGGAATTGGAGCCAGTTTGCCCCTCAATAACAAAGGAACTCCACTTGAGATAGGAAAGGGCAGAATTCTGAGACAAGGGAGCAGAGTTGCTATTTTAGGATACGGTTCTGTAGTTCAGCAATGCTTGCAAGCAGCACAAATGCTCAAACCACTAGACATTTCTGTGACAGTTGCTGATGCTAGGTTTTGCAAACCTTTGGATACTGATCTCATAAAGCTATTAGGTAAGGAGCACGAGTTTCTCCTTACAGTGGAAGAGGGTTCTATTGGAGGTTTTGGTTCACATGTTTCACATTTCCTAAGTATAGTTGGCCTCCTGGATGGACCACTGAAGTGGAGACCTATGATGCTTCCCGATCGATACATTGAACATGGATCACCACAAGATCAGACAGAAGAAGCAGGACTTTCATCAAAGAACATTGCCGCAACAGTCTTGTCTCTTCTGGAAAGGCCAAAAGAAGCTCTATTGTTCAAGTAA 2139 0.3548 MALSATFVKTNRSILPFHQNSSPNHGRIKQLCVRASASSLDDDEDRTVVRKEKDGWKIKFSSQKPATPLLDTINYPAHMKNLSLQDLEQLAAELRADVVHSVSNTGGHLSSSLGVVELTVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKREESVYDVFGTGHSSTSISAGLGMAVARDLLGKKNSIVSVIGDGAMTAGQAYEAMNNAGFLDSNMIIILNDNKQVSLPTATIDGPATPVGALSSALSKIQASTKFRKLREAAKGITKQIGGTTHQLAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIEDLVTILEKVKEMPAPGPTLIHVVTEKGKGYPPAEVAADKMHGVVKFVPTSGHQLKPKSSTLTYTQYFAESLIKEAEIDNKIVAIHAAMGGGTGLNYFHKRFPDRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGIGASLPLNNKGTPLEIGKGRILRQGSRVAILGYGSVVQQCLQAAQMLKPLDISVTVADARFCKPLDTDLIKLLGKEHEFLLTVEEGSIGGFGSHVSHFLSIVGLLDGPLKWRPMMLPDRYIEHGSPQDQTEEAGLSSKNIAATVLSLLERPKEALLFK 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01861 712 Gene3D - 62 364 - -
Gma09g01861 712 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 712 IPR005477 GO:0008661|GO:0016114
Gma09g01861 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 389 580 IPR029061 -
Gma09g01861 712 SMART Transket_pyr_3 392 557 IPR005475 -
Gma09g01861 712 Pfam Transketolase, pyrimidine binding domain 392 553 IPR005475 -
Gma09g01861 712 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 72 702 IPR005477 GO:0008661|GO:0016114
Gma09g01861 712 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 69 703 IPR005477 GO:0008661|GO:0016114
Gma09g01861 712 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 70 355 IPR005477 GO:0008661|GO:0016114
Gma09g01861 712 Pfam Transketolase, C-terminal domain 571 694 IPR033248 -
Gma09g01861 712 ProSitePatterns Transketolase signature 2. 498 514 IPR020826 -
Gma09g01861 712 Gene3D - 571 703 IPR009014 GO:0003824
Gma09g01861 712 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 1 712 - -
Gma09g01861 712 CDD TPP_DXS 106 361 IPR005477 GO:0008661|GO:0016114
Gma09g01861 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 67 454 IPR029061 -
Gma09g01861 712 CDD TPP_PYR_DXS_TK_like 398 551 - -
Gma09g01861 712 SUPERFAMILY TK C-terminal domain-like 566 703 IPR009014 GO:0003824
Gma09g01861 712 ProSitePatterns Transketolase signature 1. 95 114 IPR005474 -
Gma09g01861 712 Gene3D - 392 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01861 Gma-Chr9 44212744 44216981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01861 434 650 Acyl Lipid Metabolism Gene Families AT1G55510 23.144 1.87e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01861 K01662 - gmx:100799481 1415.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01861 09 44212744 44216981 Gma09g01861 09 44212744 44216981 ECH