Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00628 ATGGCGTCCGTGTACATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGACCAGCTTCCGAGGGACGCCTCCGACATCCTCGACATCCTCAAGGCGGAACAAGCCCCTCTCGATCTCTGGCTCGTCATTGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGGTCCAGTCCAGAAATTGATGACTATTATGCTGATGTCAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGAGCTTACTACAGCTACCTTGGAAAAATAGAGACGAAACAAAGAGAAAAGGAGGAGCATTTCATTTTGGCAACACAGTATTACAATAAAGCATCTAGGATTGACATGCACGAGCCCTCCACTTGGGTTGGGAAAGGTCAGCTTTTGCTAGCAAAGGGTGAAGTAGAACAGGCATCTGCTGCATTTAAGATTGTGTTAGATGGAGACCGTGATAATGTTCCTGCTCTTTTGGGCCAGGCATGTGTTGAGTTCAACCGCGGACGATATTCTGATTCACTTGAGTTGTATAAGAGAGCGTTGCTAGTGTATCCTGATTGCCCAGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAGAAAGCTCAACAGGCATTTGAACGTGTTTTACAGCTAGATCCAGAAAATGTTGAGGCTCTTGTTGCCCTTGCTATAATGGATTTGCGTACTAATGAAGCTACTGGAATCAGGACGGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCATACTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGACAGCATTTTTTAGTAGAACAACTGACTGAAACTGCATTGGCTGTTACCAACCATGGCCCAACAAAGTCTCACTCTTACTACAATTTAGCACGTTCATATCATAGCAAGGGAGACTATGACAAAGCTGGGGTGTATTACATGGCATCCGTCAAGGAAGTCAACAAGCCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTGCAGATAAAGTTGGGAGATTTTAAAAGTGCACTCTCAAACTTTGAAAAGGTCTTGGAAGTGTACCCAGATAATTGTGAGACATTGAAAGCGCTTGGGCATATATATGTTCAACTTGGTCAAACTGACAAGGGCCAGGACTTTATTAGGAAAGCTACAAAAATTGATCCCCGTGATGCCCAGGCGTTTCTTGAGCTGGGAGAATTGTTAATTCTTTCTGACACGGGAGCTGCACTGGATGCATTCAAAACTGCTCGTACTCTATTTAAGAAGGGAGGTCAAGAAGTACCAATTGAATTACTCAATAATATTGGTGTGCTTCAGTTTGAAAGGGGGGAATTTGAGCTTGCTCAACAAACATTTAAGGAGGCACTAGGTGATGGTGTTTGGCTATCTTTCATCAACGAGGAAAAGAAGTCTTCCATTGATGCTGCTACTTCTACTCTTCAATTCAAGGACATGAAATTATTTCATGACCTTGAAAGCAATGGTCACCATGTGGAAGTTCCTTGGGATAAAGTCACTGTACTCTTTAACTTGGCTAGGTTACTTGAGCAGTTAAATGATTCTGGAACTGCAAGCATATTGTATCGCCTTGTCTTGTTCAAGTATCCTGACTATATTGATGCGTATCTGAGGCTAGCTGCAATTGCAAAAGCTCGGAACAACATTCTGTTAAGCATTGAACTGGTTAATGATGCCTTGAAGGTGAATAACAAGTGTCCCAATGCATTATCTATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTGAAGGCAAAAGAAACTCTCCGCGCGGCTAGTGATGCAACTGAAGGCAAGGACTCATATGCCACTCTTTCTCTGggaaactggaactactttgcagcagttcgcaatgagaagagaaatccgaagctagaagctactcatttggaaaaggccaaagaactttataccagagttctgattcagcattcttctaatttatatgctgccaatggtgctgcggtagtcttagctgaaaagggccattttgatgtgtcaaaggatatctttacccaggttcaagaagctgccagtggtagtgtttttgtccagatgcctgatgtttggataaatctggcgcatgtttattttgctcaggggaattttactttggctgtgaaaATGtatcaaaattgcttgcggaagttttatcacaacacagactctcaaatacttctatatttagctcgtacacattacgaggctgaacagtggcaagactgtataaaaactctactgagagccatacatttggcaccctcaaactataccttaaggtttgatgcaggggttgcaatgcaaaagttttcagcatcaacactacaaaaggcaaagaggactgcagatgaggtgagagcaactgttgcagagcttcaaaatgctgttcgtgtatttagtcagttgtctgctgcttccaacctacatattcacgggtttgatgagaagaaaattgacactcatgttggatactgcaaccacttactttcagctgcaaaagttcatcttgaagcagctgaacgtgaagagcagcaagtacggcagagacaagaacttgctcgtcaggttgcatttgctgaggaagcccgtcgaaaggctgaagagcaaaggaaatttcagATGGAAAGGAGAAAACAAGAGGATGAACTAAAGCGAGTGCAACAACAGGAGGAACATTTTAGGCGTGTTAAGGAGCAATGGAAGAGCAGCAGTCATTCAAAACGGAGAGAAAGATCAGATGATGAAGAGGGAGGAGGGACTGGTGAGAAGAAGAGAAAAAAAGGTGGAAAGCGGAGAAAGAAGGATAAGCACTCAAAATCGCGCTATGACACAGAGGAACCCGAAAATGATATGATGGATGAACAGGAAATGGAGGATGAAGAAGCTGACATAAACTACAGAGAGGAGCCCCAAACTCAGATGAATGATGATGCTGAGGAAAATGCTCAGGGTCTTCTTGCAGCAGCTGGGCTTGAAGATTCCGATGCAGATGAGGAAGCGCCTGCACCTTCCTCAAGCATAGCCCGGCGAAGGCAAGCATTATCAGAATCTGATGATGACGAACCATTAATACAAAGGCAGTCAAGTCCAGCAAGAGAAAACTCTGCTGATATGCAGTTGAGTGATGGAGAAATCAGGGATGGGGATAAGACAAATGGAGATGATGGCAGTGAAGAGGAGAAACAATATTAG 3270 0.33 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVEALVALAIMDLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVWLSFINEEKKSSIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNDSGTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLGELELKNDDWVKAKETLRAASDATEGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAFAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFRRVKEQWKSSSHSKRRERSDDEEGGGTGEKKRKKGGKRRKKDKHSKSRYDTEEPENDMMDEQEMEDEEADINYREEPQTQMNDDAEENAQGLLAAAGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPARENSADMQLSDGEIRDGDKTNGDDGSEEEKQY 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00628 1089 Coils Coil 801 821 - -
Gma09g00628 1089 MobiDBLite consensus disorder prediction 1038 1052 - -
Gma09g00628 1089 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Gma09g00628 1089 Gene3D Tetratricopeptide repeat domain 7 337 IPR011990 GO:0005515
Gma09g00628 1089 SUPERFAMILY TPR-like 653 802 IPR011990 GO:0005515
Gma09g00628 1089 Coils Coil 855 922 - -
Gma09g00628 1089 SUPERFAMILY TPR-like 106 296 IPR011990 GO:0005515
Gma09g00628 1089 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1045 IPR031101 GO:0006355|GO:0016570
Gma09g00628 1089 Pfam Tetratricopeptide repeat 354 412 - -
Gma09g00628 1089 MobiDBLite consensus disorder prediction 895 1089 - -
Gma09g00628 1089 MobiDBLite consensus disorder prediction 1065 1089 - -
Gma09g00628 1089 Gene3D Tetratricopeptide repeat domain 344 503 IPR011990 GO:0005515
Gma09g00628 1089 Gene3D Tetratricopeptide repeat domain 648 837 IPR011990 GO:0005515
Gma09g00628 1089 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Gma09g00628 1089 SUPERFAMILY TPR-like 303 475 IPR011990 GO:0005515
Gma09g00628 1089 MobiDBLite consensus disorder prediction 973 991 - -
Gma09g00628 1089 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Gma09g00628 1089 Pfam Tetratricopeptide repeat 169 228 - -
Gma09g00628 1089 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
Gma09g00628 1089 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Gma09g00628 1089 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Gma09g00628 1089 SUPERFAMILY TPR-like 449 703 IPR011990 GO:0005515
Gma09g00628 1089 MobiDBLite consensus disorder prediction 895 949 - -
Gma09g00628 1089 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Gma09g00628 1089 Pfam Tetratricopeptide repeat 718 781 - -
Gma09g00628 1089 Gene3D Tetratricopeptide repeat domain 510 647 IPR011990 GO:0005515
Gma09g00628 1089 SMART tpr_5 197 230 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 162 195 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 558 591 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 524 557 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 128 161 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 305 338 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 448 477 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 376 409 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 342 375 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 592 625 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 749 782 IPR019734 GO:0005515
Gma09g00628 1089 SMART tpr_5 713 746 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00628 Gma-Chr9 7073861 7089865 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00628 K15176 - gmx:100794371 2027.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00628 09 7073861 7089865 Gma09g00628 09 7073861 7089865 ECH
Gma15g01645 15 16969720 16994527 Gma09g00628 09 7073861 7089865 GST